| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0228 |
|---|
| Symbol | |
|---|
| ID | 7387541 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 201225 |
|---|
| End bp | 201809 |
|---|
| Gene Length | 585 bp |
|---|
| Protein Length | 194 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643649930 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002548146 |
|---|
| Protein GI | 222147189 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4961] Flp pilus assembly protein TadG |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGTCGA AACCCGCCCT GATTTTGCTT CTATGCAGAC CTTTCCGGCT GTTGGCGCTG
GATCGTTCCG GTGTCGGCGC GGTGGAATTT GCGCTGATCG TGCCCTTGTT GCTGGTTCTC
TATCTGGGGG CATTTGAGCT TACCATGGCG CTCAGCGTGT CGCAGCGCGC CACCACCAGC
GCCGGGGCCA TCGCCGATAT CGTGGCGCGC AAGCAGAAAA CGGTCGATAA GACCTTTCTG
GCGAACATGC CGGATGTGCT GAAGGCCATG TTCGCCCCGA CTGCGACGAC AGGCTATACG
CTGAAGATCA CCGGCATCAA GGTGGACAGC AATGTCAAGG CGACGATTGC CTGGTCCTGG
GCACAGGATG GCTCCAAACC CTATGCAACC GGTGCAACGG TGACGCTTCC GTCCGGCATG
GCCGCCGCCA ATGCCTTTTT CGTCCATGCG GAGCTGACCA TTCCCCATGA GCTTGTCACC
TATCTGCCTG GATTTACCGG ATCAAGCGTC AGCACAATTA CCATCGCCAG GGATTATTAC
TTCCGTCAGC GGGAAAACGG CGAGATTGCC TGCTCGGATT GCTGA
|
|---|
| Protein sequence | MRSKPALILL LCRPFRLLAL DRSGVGAVEF ALIVPLLLVL YLGAFELTMA LSVSQRATTS
AGAIADIVAR KQKTVDKTFL ANMPDVLKAM FAPTATTGYT LKITGIKVDS NVKATIAWSW
AQDGSKPYAT GATVTLPSGM AAANAFFVHA ELTIPHELVT YLPGFTGSSV STITIARDYY
FRQRENGEIA CSDC
|
|---|
| |