Gene Avi_0226 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0226 
Symbol 
ID7387540 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand+ 
Start bp200605 
End bp201228 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content55% 
IMG OID643649929 
Producthypothetical protein 
Protein accessionYP_002548145 
Protein GI222147188 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4961] Flp pilus assembly protein TadG 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTCTTTC CAGATGGCAC CCGTGACAAA CGCGACGGAC TATGGCGCAG ATGGAGATTA 
GTGGCCAGGC GTTTGCGTCG CTCCCGTGAC GGATCGGCGG CCATCGAATT CGCCATTCTG 
GCCATTCCTT ATTTCCTGAT CATTTTTGCC ATTCTGGAAA CATTCGTGGC TTTCATCGCC 
GAACAGACCG TCAATGCAGC GGTCGATACG CTGGGCAGGC AATTGCGCAC CGGCAATATC 
ACCTATAATC AGGCCCGTAG CACCGATAAG ACGGCGACGG AATTCCGCCA GTTGTTCTGC 
AACGAGATTT CCTTTCTCCT CACCTGCGAT GCTGCGGAAG TCGCAACACC CAACCGGCTC 
TGGCTCGATG TGCGCACGTA TACGGCTTTC TCCGCCATGC CCACCACAAT TGCCACCACA 
TCCGGTAGCC TTGATACGTC CAGTTTTGCC TTCACGCCTG GCGGGGCAAG CTCGATCAAT 
ATGCTGCGTG CCTTTTATTA TTGGCCGGTC ACCACCGATC TCGTCCGGCC CTATATTGCC 
ACGATCCACC GCCCTGGTGT TTCCAGCAAT TCCGATTACC TGATCGTATC GACCTTGGCC 
TTCCAAAATG AGAATTATCC ATGA
 
Protein sequence
MVFPDGTRDK RDGLWRRWRL VARRLRRSRD GSAAIEFAIL AIPYFLIIFA ILETFVAFIA 
EQTVNAAVDT LGRQLRTGNI TYNQARSTDK TATEFRQLFC NEISFLLTCD AAEVATPNRL 
WLDVRTYTAF SAMPTTIATT SGSLDTSSFA FTPGGASSIN MLRAFYYWPV TTDLVRPYIA 
TIHRPGVSSN SDYLIVSTLA FQNENYP