| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0224 |
|---|
| Symbol | pilQ |
|---|
| ID | 7387539 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 199899 |
|---|
| End bp | 200378 |
|---|
| Gene Length | 480 bp |
|---|
| Protein Length | 159 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 643649928 |
|---|
| Product | pilus subunit transmembrane protein |
|---|
| Protein accession | YP_002548144 |
|---|
| Protein GI | 222147187 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.881956 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTCCTGA TCTGCACGAG AGAAATGTTT TCCATGGCGC TGCCGATGTT GTTTCGCTGC
TGTTTTGCGT TTTTGCTTGC CGGAATGGCG ACAGTTCCCG GCACAGCGCA TGCTGAAGAC
CCGCTTTTGC GCGTGGTGAT GAATCAGGCC CGCATTCTTA AACTCGACCG GCCGGTCAGC
AAGGTTATCA TCGGCAATGA GAAAGTCGCC GATGCCACCG TGGCCGACCC AAAAACCATC
GTGCTGACAG GGCGTAGCTT CGGGACGACG AATTTGGTTC TGCTTGACAG CCAGGGCAAT
GCCATTTTCG ACGAGCGTAT TCTTGTCTCT ATCGATGAAG CCAATACAGT TCGGCTGTAC
AAACAGACGC AACGCACGGT CCTGTCCTGC ACGCCAAGCT GTGAGCAGCA TTCGCAGTCT
GGAAATTCCA CTGGAGATGC GTCTTCCAGC AATAGTGCGT CCAGCGGAAC CGGCCAATAG
|
|---|
| Protein sequence | MVLICTREMF SMALPMLFRC CFAFLLAGMA TVPGTAHAED PLLRVVMNQA RILKLDRPVS
KVIIGNEKVA DATVADPKTI VLTGRSFGTT NLVLLDSQGN AIFDERILVS IDEANTVRLY
KQTQRTVLSC TPSCEQHSQS GNSTGDASSS NSASSGTGQ
|
|---|
| |