| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0221 |
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| Symbol | ctpB |
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| ID | 7387536 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 198275 |
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| End bp | 198793 |
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| Gene Length | 519 bp |
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| Protein Length | 172 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643649925 |
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| Product | component of type IV pilus prepilin peptidase protein |
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| Protein accession | YP_002548141 |
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| Protein GI | 222147184 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4960] Flp pilus assembly protein, protease CpaA |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGGCTG TTACGCTGTC ACTGATCATG CCTCTTTGTC TGGCACTCGC GGCCTTTACC
GATCTGTTCG AGATGAAGAT CCCCAATGCG ATCCCCCTTG TGCTGCTTAT CGGTTTTGCC
GCCCTCGCCC TGGTGTTGGG CCTGCCTATA GGATTGGCCG GTCTGCATCT CACGGCGGGT
CTGATCGTGT TTTTCGGTTG TTTCACACTG TTTGCCGTCA ATGTCATGGG CGGCGGCGAT
GCCAAGCTTT TGACGGCTGC CGCCGTCTGG TATGGTTTCA ACATCAGCCT GGTGGAATTT
CTGATTGAAG TCGCGATGTT TGGCGGCGTG CTGACCCTGA TGATCCTGGC TTTGCGCAGC
CAGGCCAATA CCGTAATGGC CCTTGGACTG CGCCTGCCGC GCTCGCTGAT TGTCGAGAAA
AAAATCCCCT ATGGTATTGC CATTGCCATT GGCGGTTTTT GCAGTTTCCT CAGTGCACCA
GTGGTGACAT TGGCCTTGGC GACAGTTTCG CCGAAATAA
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| Protein sequence | MLAVTLSLIM PLCLALAAFT DLFEMKIPNA IPLVLLIGFA ALALVLGLPI GLAGLHLTAG
LIVFFGCFTL FAVNVMGGGD AKLLTAAAVW YGFNISLVEF LIEVAMFGGV LTLMILALRS
QANTVMALGL RLPRSLIVEK KIPYGIAIAI GGFCSFLSAP VVTLALATVS PK
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