| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0213 |
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| Symbol | ctpH |
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| ID | 7387530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 191228 |
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| End bp | 192232 |
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| Gene Length | 1005 bp |
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| Protein Length | 334 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643649919 |
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| Product | component of type IV pilus |
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| Protein accession | YP_002548135 |
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| Protein GI | 222147178 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4965] Flp pilus assembly protein TadB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCATCA ATGTGCTCGC CATCGTGCTT CTTGCAGCCC TCGCGGCGGG ATCGCTGGCC
TATGTCCTGT TGTTTTCACG GGTGCAGGCC GACAAGAAAA CCGCCACACG CCTCGCCCGG
GTGAAAAATG CGGAAGCCGA TACCGCCAAG AAACAGGTGG CGCGCGACCG GGTTCAGGAG
CTTTCCAAGC GACGCAAGTC CGTGCAGGAC ACGCTGAAGG AAATTGAGCG CAAGCAGAAT
GAGAAAAACA AGAAAATCTC CAGCCAGTCG CTGAAACAGC GGCTCGGCCA GACCGGCCTT
GATGTCAGCC TCATCCAGTT CAGCATTGCC AGCACCACCC TTGGTCTGGT GTTTTTCTGC
CTGTGCTTTG TCCTCGGCAT GTCTCTGTTT GTGTCCTTGG GTATCGCCTT CACGGCTGGT
GCCGGCCTGC CGCGCTGGAT CGTCAGTTTC CTGATCCGCC GGCGTCAGGA AAAATTCCTG
ACCGAATTTC CCAATGCGCT GGACGTGATG GTGCGGTCGA TCAAATCCGG CCTGCCGCTC
AATGATGCCT TGAGGATGAT TGCCGTCGAT GCGCAGGAGC CGGTCAAGAC CGAGTTTCGC
CGCGTGGTCG ATGCGCAACA ACTGGGCATA ACGGTGCCGG AAGCCTGCGG GCGTATGTTC
AACTCCATGC CTTTGCAGGA GGTCAGCTTC TTTGCCATCG TCATCGCCAT TCAGTCCCAG
GCGGGCGGCA ATCTCTCCGA AGCCCTATCC AACCTATCGA AAGTGCTGCG TGAGCGGCGC
AAGATGAAGG CCAAGGTCAG CGCCTTGTCG ATGGAGGCCA AGGCATCAGC GGTCATCATC
GGCGCGTTAC CCTTCATCGT CGCCTTTCTC GTCTACATTT CCTCTCCAGC CTATATCATG
GTGCTGTTTA CCGACCCGCG CGGCCATATG ATTCTGGGGT TCTCGGCGTT CTGGATGTCT
ATCGGCATTT TCGTCATGCG TAACATGATC AATTTTGACA TTTGA
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| Protein sequence | MTINVLAIVL LAALAAGSLA YVLLFSRVQA DKKTATRLAR VKNAEADTAK KQVARDRVQE
LSKRRKSVQD TLKEIERKQN EKNKKISSQS LKQRLGQTGL DVSLIQFSIA STTLGLVFFC
LCFVLGMSLF VSLGIAFTAG AGLPRWIVSF LIRRRQEKFL TEFPNALDVM VRSIKSGLPL
NDALRMIAVD AQEPVKTEFR RVVDAQQLGI TVPEACGRMF NSMPLQEVSF FAIVIAIQSQ
AGGNLSEALS NLSKVLRERR KMKAKVSALS MEAKASAVII GALPFIVAFL VYISSPAYIM
VLFTDPRGHM ILGFSAFWMS IGIFVMRNMI NFDI
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