Gene Avi_0202 details

Gene Information

• Locus tag: Avi_0202
• ID: 7387521
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 181269
• End bp: 181937
• Gene Length: 669 bp
• Protein Length: 222 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643649909
• Product: two component response regulator
• Protein accession: YP_002548126
• Protein GI: 222147169
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGCGTATTT TACTGGCTGA AGACGATGCC AATATCGGGC GCCATGTGGC GGAGACGCTG 
AGAGGCGAGG GCTACGAGGT GACCTTGGTC AACAAGGGGC CGGATGTCTG GGAGGCTGGA 
GAGGATACCG GCCTCGGCGC CATCATTCTC GACCTCGGTC TGCCCGGGCT GGATGGGCTT 
TCGATTTTAA GGCGATGGCG CAAGGATAGG ATCCAGACAC CCGTTCTGGT TCTGACGGCG 
CGAGGGTCCT GGATGGAAAG GGTCGATGGT TTCGATGCCG GGGCGGATGA CTATCTTCCG 
AAACCGTTCC GCACAGAGGA GTTGTTGGCC CGGCTTCGCG CATTGTTGCG GCGCGCTGGA 
AAAACCAGCC ATACCCTGTT TTCAGCCGGG CGTTTTCAGG TGGATGAGGC CGGTCGGACC 
GTCACCTTCA ATGGTGCCCT GTTGGAGGTC AGCCCGCTGG AGTTTCGATT GATCCAGATT 
CTCGTCCAAA ACAAGGGCCG GGTGTTTTCA GCGTATGAGA TCGCCACCCA GATCCAGGGC 
CGCGATGACG ATGCTTCGAA AAATGCAGTC GAAGCCATGG TGGCGCGGAT CCGCAAGAAA 
ACGGATGCCA GTGCTATCGA AACACGGCGC GGCTTTGGTT ACGTCGTGCC AGACGAAAAT 
TCATGCTGA 

 

Protein sequence

MRILLAEDDA NIGRHVAETL RGEGYEVTLV NKGPDVWEAG EDTGLGAIIL DLGLPGLDGL 
SILRRWRKDR IQTPVLVLTA RGSWMERVDG FDAGADDYLP KPFRTEELLA RLRALLRRAG 
KTSHTLFSAG RFQVDEAGRT VTFNGALLEV SPLEFRLIQI LVQNKGRVFS AYEIATQIQG 
RDDDASKNAV EAMVARIRKK TDASAIETRR GFGYVVPDEN SC