| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0178 |
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| Symbol | rsmC |
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| ID | 7387984 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 165091 |
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| End bp | 166107 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643649893 |
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| Product | ribosomal RNA small subunit methyltransferase |
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| Protein accession | YP_002548111 |
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| Protein GI | 222147154 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2813] 16S RNA G1207 methylase RsmC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCGCG AAACACTGAA GACCATTTTT CATCCCTTTG TCACCGAAGC TGTAGCTCTT
CCAGGCGAAG ACGAACGCTT CCTGTTTCTC GGTGCTGAGG CCGGTTTCGT GAAGCCGGAA
GGCTTTGGTG CCGAATTGAC GGTGGTCCAA AGTTTCCGCC CCGATTTTCG CCGCCTGGAG
GCAGCCCGTC AAACGCCGGT TGCTGTTGTG ACAGGTGAGG ATTATAACGG CGCGCTGGTT
TTGGCTGGCA AGCACAAGGG TCTCAACGAA AACCGTGTTG CCGAAGCGCT GGCGCGTGTC
CGGGCCGGTG GCGTTATCAT TGTGGCCGGT GCCAAAGAAG ACGGGATTCA GCCGCTGCGC
AAGCAGATCG ATCGCCTTGG CCTTGAGCCG CAATCGCTGC CAAAATATCA CGGCATTGCC
GTGTGGTTCA CCGTGCCGGA GGATAAGGCT GCGGCGATTG CCGCGCTCGC TTCCAAGCCG
GTCATGGTCG AGGGCCGGTT TGAAACCTAT GCCGGGCAGT TTTCTCATAT GCATGCCGAT
CCCGGTTCTG AACTGCTGGT CAGCCGGTTG CCGGACGATT TCGATGGCAA TGCCGCCGAT
TTCGGCGCTG GTTGGGGCTA TCTGTCGGTG ATGCTGGCCG AGAAGGCACG GCGCACCAAC
CGCATCGACC TATTCGAGGC CAATTACGAC GCGCTGGAAC AGGCCAAGAA AAACCTGGCC
CGTAACTGCC CTCATCTGAC GGCACGGTTC TTCTGGCAGG ATCTGGGTAC TGAATCGCCC
AAGGAAAAAT ACGATTTGGT CATCATGAAT CCTCCTTTCC ATGAGGGTCA TGCGACGGAG
CCATCGATTG GCGAGGCAAT GATCAAAGCG GCGGCGGATG CTTTGCGCGG TGGCGGAGAT
CTGCTGATGG TGGCCAATCG TGGTCTTGCC TATGAGCCAG TTCTGGCCGC CAATTTTCGT
CAGCATGGCG AGACCTGCCG CAATGCACGC TACAAGGTGC TGTGGGCGAA GAAATAA
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| Protein sequence | MSRETLKTIF HPFVTEAVAL PGEDERFLFL GAEAGFVKPE GFGAELTVVQ SFRPDFRRLE
AARQTPVAVV TGEDYNGALV LAGKHKGLNE NRVAEALARV RAGGVIIVAG AKEDGIQPLR
KQIDRLGLEP QSLPKYHGIA VWFTVPEDKA AAIAALASKP VMVEGRFETY AGQFSHMHAD
PGSELLVSRL PDDFDGNAAD FGAGWGYLSV MLAEKARRTN RIDLFEANYD ALEQAKKNLA
RNCPHLTARF FWQDLGTESP KEKYDLVIMN PPFHEGHATE PSIGEAMIKA AADALRGGGD
LLMVANRGLA YEPVLAANFR QHGETCRNAR YKVLWAKK
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