Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0055 |
Symbol | addB |
ID | 7389050 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 44683 |
End bp | 47871 |
Gene Length | 3189 bp |
Protein Length | 1062 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 643649794 |
Product | double-strand break repair protein AddB |
Protein accession | YP_002548018 |
Protein GI | 222147061 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3893] Inactivated superfamily I helicase |
TIGRFAM ID | [TIGR02786] double-strand break repair protein AddB, alphaproteobacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | CTGATGTCCA GCCTGCAAGC CCGCATCTTC ACCATTCCCC CGGATCGGCC TTTCCTGCGG CTGATTGCCG AGACCCTGTG CGATGGCCGT CTCGCCCCCG GCTTTCGCTA TGATCCAGCC GATCCCCTGT CTTTGTCCAA GGTCACGATC CTGGTGCCAA CTCGGCGCGC CGTGCGCGTG CTGCGCGCGC AGTTCGTCGA GGTGCTGGGT GGCCAATCCG CCATTCTGCC GATGATCAAG CCCCTGGGCG AAGCCGAGGA TGATGCCAGT TATTTCGACG CGGATACCCC GGCGCTGCTG GCGTTGAACC CGCCGATCAG CAATACGGTG CGGCTGCTGG AACTGGCGCA GTTGATTCTC GCCTGGCGCA ACAAGCTGCC GGATATCGTG CTGAGCATTC ACACCGAAAC CCCGCTTGTC GCTCCGGCCA GCCCGGCTGA TGCCGTATGG TTGGCGAGGG CGCTGGTGGA ACTGATCGAT TCGGTGGAAA CCGAGGAGCG TGATTGGGCC GATCTCGACA AGCTCGATGC CCGTGATTTT GCCTCCTGGT GGCAATTGAC GCTGGCTTTC CTCGGCATTG CCAGTGCCTA TTGGCCTGCC CGGCTGGAAG AGTTGAACCG GTCTTCGCCG GTTCTCCACC GCAATGCCTT GCTGCGCACC GAACGCGACC GTGTTGGTCA CCTTTCTGAT CCTCATCCGG TGATCGTCGC GGGCTCGACC GGCTCGATTC CTGCTGCGTC CGAGCTGATC GCGGCGGTGG CGCGCTTGCC TCAGGGGGTG ATCGTGCTGC CGGGGTTGGA CAAGGCCATG CCGGATGATC AGTGGCACAG CGTCGGGGGT GAACAGCCTC CCGGCATGCC GCCGGAGCCG ACCGCCCGCA CCCATCCGCA ATACGGCCTG CACCGGCTTT TGGGCCGTCT AGGCTTGACC CGTGACGACG TGGGCGTGCT GGAAGAGGCA GAACCCGACC TTGCCGACCG CAGCGAAATT CTCTCCCGGG CGCTGTCGCC TGCCAAGGCA ACTGACCAAT GGACCGCCTG GCGGCAGGCA TTCGGGGATA ACAGGTTTCA GGCCGCCTTT GCCGATGTGG CGCTGATTGA GGCGGCCAAC GAGCGGGAAG AGGCGATCGC CATTGCCATT GCCCTCAGGC TGGCCCTGGA GCGGCCCGGT GCTGATGGTG GAGAAAGCCG CGCTGCGCTG ATTACCCCTG ACCGCAACCT TGCGCGTCGG GTCGCGTCAG AACTGGCCCG GTTCGGCATC GAGGCCGACG ATTCGGCGGG TACGCCATTT TCGGCGACGC CGCAGGGCAC GTTGCTGGTG CTGGTGTTGG AAGCCGTGTT GCGGCCCGGC GATCCCGTTG CCATCGTCTC CTTGCTTAAG CACCCACTCG CCCGGTTTGG CTTGCCCGAC GATGGACATC GTGAAGCCAC CGACGCTTTG GAAGCCATTG CGCTGCGCGG CGGCACCGGT GCCATCGACA TCGCTGCGCT GGCACCGCTG TTCGATGAAC AGGTGGTCGC CCAGTTCGAC GACCGCCATC CACCGGCCTG GCGGCGCTCT TTTACCGATC AGACCCGGCA GCAGGCACGG ATATTGGCCG AGGCAATCGC AGAGGCGGTG GAACCGCTTG CCGGTCATGT CGTCGCCAAG CCGGATGGCC ACCATTTCAC CACCCGTTTG TCTTTGAGGG AATGGGCCGA GCGTACCGGC CAGGTGCTGG AGGCCGTGGC CCGCACCGAT GAGGGTGATC TTGGCCCCCT CTGGGCCAAT GAGGCCGGTG CCGTTTTGGC CCGGCTGCTC AGCGAAATCA TGGAAACCGA TGGCCAGCTA AGCGCCGATG GTCCGCAATG GATCGAGATT GTCGCGGCGC TGACCGCCAG CGAATCGGTC AAGCCAAAAT CGCTGCGCCA TCCGCGGGTC TTCATCTTCG GCGCGCTGGA ATCGCGTCTG CAAAGTGTCG ATACGATGAT CCTCGGTGGG TTGAATGAAG GATCATGGCC CGGCACCACC ACCAATAACC CGTTTTTGTC GCGCAGCATG AAAACCGAAA TGGGACTGGA GCCGCCGGAA CGGCAGATCG GCCAGCTTGC CCATGATTTC GAAATGGCCA ATGGCACCCG CCACCTGATC TATTGCCGCG CCCTGCGGCA GGGATCGGCC CCCACCGTTG CCTCCCGCTG GCTGCAAAGG CTGCTGGCGC TGGGTGGCAA GGATTTTGCT GAGACCCTGA AAGCCAGGGG TGAGCGCTAC CGGCATTTTG CTGACCTGCT CGATAAAGGC GCAGATCAAG CCGCCGCCCA ACGCCCGCAG CCAAAGCCGC CCGCCGATCT GCATCCGAAA ACCTATTCCT TCAGCGAGGT CGGGCGTCTC AGGCGCGATC CCTATTCGAT CTATGCCCGC CGCATTCTGA AGCTCGATCC GGTTGAACCG TTCAACAGCG ATCCAGGTGC CTCCGAACGC GGCACGCTCT ACCATGCTAT TGTCGAGCAA TTCGTGGCGC GTATGCCCGA AAAGCTGGGG CCTGACACTG AACAGTTGAT GAGTGAGATT GCCGACACGC TGTTTGCCGA GGAAAATCTG CCGCCGCATA TCCATGTTGT CTGGCGCAAG CGTTTCTCCG AGGTTGGCCT CGCCTTTATC GAGTGGCAAC GCCAGCGCGA TCCGGCCAAG CTGGTAACGG AGGCCCGTGC CGGGGTAGAA CTTGGCGAGA TCGATATCCG GCTCACTGGT ATTGCCGACC GGATCGATAT CCGGGCTGGT CACGCCGATA TCATCGATTA CAAAACCGGT CTTAACCCCA GTGTTTCCCA GGCCCGCAGC CTACTTGACC CGCAATTGGC TTTGGAAGCT GCGGCTCTGA CCATGGGCGC CTTCAAGGAT GTCGGAAGGC TGAATCCGGA TAATTTGATT TATGTCCGGC TGCGGCCCGG CGGGCGCTTC AAGGCTGATC AGGTTAATAA CGAGCTGACC GGCAAGGGCG ACAAGGCAAA GTCGGCACTG GATCTGGCGC ATGAATCCAT CGCGCAACTG ACCCGCTTCG TGACCCTGCT GCAATCGGGC GAGCGCGGCT ATGTCTCGCG GCTGATGCCA GCGATGATGA ATGATTTCAG CGGCGACTAC GATCATCTGG CCCGGGTCGC TGAATGGTCC ACCGCAGAAG CGGCAGAGGA GAGCAGCAGT GATGACTGA
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Protein sequence | MMSSLQARIF TIPPDRPFLR LIAETLCDGR LAPGFRYDPA DPLSLSKVTI LVPTRRAVRV LRAQFVEVLG GQSAILPMIK PLGEAEDDAS YFDADTPALL ALNPPISNTV RLLELAQLIL AWRNKLPDIV LSIHTETPLV APASPADAVW LARALVELID SVETEERDWA DLDKLDARDF ASWWQLTLAF LGIASAYWPA RLEELNRSSP VLHRNALLRT ERDRVGHLSD PHPVIVAGST GSIPAASELI AAVARLPQGV IVLPGLDKAM PDDQWHSVGG EQPPGMPPEP TARTHPQYGL HRLLGRLGLT RDDVGVLEEA EPDLADRSEI LSRALSPAKA TDQWTAWRQA FGDNRFQAAF ADVALIEAAN EREEAIAIAI ALRLALERPG ADGGESRAAL ITPDRNLARR VASELARFGI EADDSAGTPF SATPQGTLLV LVLEAVLRPG DPVAIVSLLK HPLARFGLPD DGHREATDAL EAIALRGGTG AIDIAALAPL FDEQVVAQFD DRHPPAWRRS FTDQTRQQAR ILAEAIAEAV EPLAGHVVAK PDGHHFTTRL SLREWAERTG QVLEAVARTD EGDLGPLWAN EAGAVLARLL SEIMETDGQL SADGPQWIEI VAALTASESV KPKSLRHPRV FIFGALESRL QSVDTMILGG LNEGSWPGTT TNNPFLSRSM KTEMGLEPPE RQIGQLAHDF EMANGTRHLI YCRALRQGSA PTVASRWLQR LLALGGKDFA ETLKARGERY RHFADLLDKG ADQAAAQRPQ PKPPADLHPK TYSFSEVGRL RRDPYSIYAR RILKLDPVEP FNSDPGASER GTLYHAIVEQ FVARMPEKLG PDTEQLMSEI ADTLFAEENL PPHIHVVWRK RFSEVGLAFI EWQRQRDPAK LVTEARAGVE LGEIDIRLTG IADRIDIRAG HADIIDYKTG LNPSVSQARS LLDPQLALEA AALTMGAFKD VGRLNPDNLI YVRLRPGGRF KADQVNNELT GKGDKAKSAL DLAHESIAQL TRFVTLLQSG ERGYVSRLMP AMMNDFSGDY DHLARVAEWS TAEAAEESSS DD
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