| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6264 |
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| Symbol | rhaD |
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| ID | 7381304 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 1255985 |
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| End bp | 1258096 |
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| Gene Length | 2112 bp |
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| Protein Length | 703 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643649726 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_002547950 |
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| Protein GI | 222107159 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only
[S] Function unknown |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG3347] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR02632] rhamnulose-1-phosphate aldolase/alcohol dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.340053 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGGCC AAACCGCAGC GGGCCAACCC CGCCTTCTCG ACAATCGCTG GGATGATGTC
TACGCCGAAA CGCTGGATGA GGCAGGCAAG CTGCTCTATC GGTCCAATCT GCTTGGCGCC
GACAAGCGCA TTACAAACTA TGGTGGCGGC AACACCTCGG CCAAGGTCAT GGAAACCGAC
CCTCTCACCG GCCAGACGGT CAAGGTTTTG TGGGTCAAAG GGTCCGGCGG CGATGTCGGC
ACCATCAAAA TCGACGGATT CGCGACACTC TACCAAGACA AGCTTGAGGC GCTGAAAGGT
ATTTACCGGG GTGTTGACGA TGAAGACCGC ATGGTCGGTT TCCTGCCTCA TTGCACATTC
AACCTCAATC CGCGCGCGGC TTCCATCGAT ACGCCGCTGC ATGGTTTCGT GCCGTTTACC
CATGTCGATC ATATGCATCC CGATGCGATC ATCGCCATTG CCGCGTCAAA GAACTCGAAA
AACCTGACAA AAGTGATCTT TGGCGATGAG ATCGGCTGGC TGCCCTGGCG CCGCCCCGGC
TTTCAGCTTG GGCTTGATCT GGAAGCCTTC GTCAAGGCCA ATCCGCAGGC CAAGGGCGTC
GTGCTGGAAA GCCATGGCCT GTTCACCTGG GATAATGACG CCAAGGCCTG CTACGAGCTG
ACGCTTGATA TCATCAACAA AGCCATCCAG TGGTTTGCTC GGGAAACAGA AGGCAAGGTG
ATTTTTGGCG GCGCAGCCAC GCAAAGCCTG CCTGTAGCCG ATCGTCGCGC CATTGCCGCA
AGGTTGATGC CGGAAATTCG CGGACGGATC GGCAAGGCGG AGCGCAAGCT TGGTCATTTC
GACGATCAGG ATGCCGTGCT TGAATTCGTC AATTCCAATC ATCTCCAGCC ACTCGGCGCA
CTGGGTACCT CCTGCCCTGA TCATTTCTTG CGCACCAAAA TCCGACCGCT GATCGTTGAT
TTCAATCCGA GCCAGCCGGA TGTGGATGCG GTGCTTGACG GTCTCGATGC GGCACTTGAG
GCCTATCGCG CCGATTACAA CAGGTATTAC GAGAGCTGCA AACACGATAA TTCTCCAAAA
ATCCGTGACC CCAATCCGGT GATCTTCCTC ATTCCGGGCG TTGGCATGCT GTCTTTCGCC
AAGGACAAAG CGACGGCCCG GATCGCCGGC GAATTCTACG TCAATGCCAT CAATGTCATG
CGTGGCGCAT CCACCGTTTC GCAGTATCAG GGCCTGCCGG AGCAGGAAGC CTTCGATATC
GAATATTGGC TGCTGGAAGA AGCAAAGCTG CAACGCATGC CCAAGCCGAA AAGCCTGGCC
GGAAAGGTGG CTTTCGTCAC CGGCGGCGCG GGCGGCATTG GCAGGGCTAC GGCGGAGCGG
CTAGTGGCTG AAGGAGCTTG CGTTGTGCTG GCCGACATTG ACGCTGCCGC ACTTTCTGAG
ACGACCGCCG ATTTCACCAA ACGCCATGGC GGTGATGCCA TACGCTCGGT TCAACTGGAC
GTCACCCGCG AAGATGCCGT GATCAGCGCC TTTGCCGAGG CCAGTGTCGA ATTCGGTGGG
GTGGATATTC TGGTGTCGAA TGCGGGCATT GCCTCGTCCG CCCCCGTCGA AGACACCACG
CTTGCGATGT GGAACAAGAA TATCGATATT CTCGCCACCG GTTACTTTCT GGTGTCACGG
GAAGCCTTCC GACTATTCCG CAGGCAGGCA TTGGGTGGCA ATGTGGTGTT TGTCGCCTCG
AAAAATGGTC TTGCCTCTTC CCCCAATGCC TCGGCCTATT GCACGGCCAA GGCAGCGGAA
ATTCATCTAG CGCGTTGCCT GGCGCTGGAA GGCGCCGATG CGGGAATCCG CGTCAACACC
GTCAATCCGG ATGCCGTGCT TCGAGGTTCA AAAATCTGGA ATGGCGAATG GCGCGAGCAG
CGCGCGGCAT CCTCCAAGAT CGAGGTGGAC GATCTTGAGG AACATTATCG CAAGCGCTCG
ATGCTGAAGC TGAACGTATT TCCTGAAGAT ATTGCCGAAG CCATCTACTT TCTGGCTTCG
GATGCGTCGG CAAAATCGAC CGGCAATATC ATCAATGTCG ATGCGGGCAA CGCCCAGAGT
TTTACGCGCT AA
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| Protein sequence | MTGQTAAGQP RLLDNRWDDV YAETLDEAGK LLYRSNLLGA DKRITNYGGG NTSAKVMETD
PLTGQTVKVL WVKGSGGDVG TIKIDGFATL YQDKLEALKG IYRGVDDEDR MVGFLPHCTF
NLNPRAASID TPLHGFVPFT HVDHMHPDAI IAIAASKNSK NLTKVIFGDE IGWLPWRRPG
FQLGLDLEAF VKANPQAKGV VLESHGLFTW DNDAKACYEL TLDIINKAIQ WFARETEGKV
IFGGAATQSL PVADRRAIAA RLMPEIRGRI GKAERKLGHF DDQDAVLEFV NSNHLQPLGA
LGTSCPDHFL RTKIRPLIVD FNPSQPDVDA VLDGLDAALE AYRADYNRYY ESCKHDNSPK
IRDPNPVIFL IPGVGMLSFA KDKATARIAG EFYVNAINVM RGASTVSQYQ GLPEQEAFDI
EYWLLEEAKL QRMPKPKSLA GKVAFVTGGA GGIGRATAER LVAEGACVVL ADIDAAALSE
TTADFTKRHG GDAIRSVQLD VTREDAVISA FAEASVEFGG VDILVSNAGI ASSAPVEDTT
LAMWNKNIDI LATGYFLVSR EAFRLFRRQA LGGNVVFVAS KNGLASSPNA SAYCTAKAAE
IHLARCLALE GADAGIRVNT VNPDAVLRGS KIWNGEWREQ RAASSKIEVD DLEEHYRKRS
MLKLNVFPED IAEAIYFLAS DASAKSTGNI INVDAGNAQS FTR
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