Gene Avi_6256 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_6256 
Symbol 
ID7381297 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand- 
Start bp1247700 
End bp1248359 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content54% 
IMG OID643649719 
ProductTranscriptional regulator 
Protein accessionYP_002547943 
Protein GI222107152 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.109242 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAGAC AGGACATATC CGATGCAGGC CGCACTCCCG TCGATACGGT CGCAGGCCGC 
CGCCGGAATT CGGTGAAAGG GGCCGCGCGG CGAGAAGAAA TCCTGCAGGC TGCGCTCAAC 
CGTTTTGCCA AGGATGGCTT TCAAAATGCT GCAATCGCAG ACATTGCTGA GGATGTCGGC 
CTGTCTCTTC CTGGTCTTCT GCATTATTTT CCGACCAAGG TTGACCTTCT CCTGGCGATC 
CTGGAACGAC GAGACAAAGA GACAGCGCCG GACTTAAACA AGAAAATTCC ACATTGGCGC 
GATTTCCTCG GCCTATTGGT TGAGGTCACC AACCAAAACA TGCAATCGGA GGGGGTTGTG 
CGGGCATTTT CGATCCTTAA CGCCGAAAGC CTGCTTGCAG GGCACCCGGC CCAGGCGTGG 
TTTCACAAAC GTAGCCTGCA ACTGCGCCAC AAACTGGCCA GTATCTTTGC AGAAGGCATT 
CTGAATCATG AGATCAAATC CGACATCGAT CCCCAAGGGA TAGCAACGGA AATTATCGGC 
CTGATGGATG GCTTGCAAAT GCTCTGGCTT CGGCTGCCCG ACAGTACAGA TATGGGCGTC 
CTGTTTTCCG CTTATGTCGC GCGGCTGATC GCATCGATTG AGGTCGCTGA AAAGCCTTAA
 
Protein sequence
MARQDISDAG RTPVDTVAGR RRNSVKGAAR REEILQAALN RFAKDGFQNA AIADIAEDVG 
LSLPGLLHYF PTKVDLLLAI LERRDKETAP DLNKKIPHWR DFLGLLVEVT NQNMQSEGVV 
RAFSILNAES LLAGHPAQAW FHKRSLQLRH KLASIFAEGI LNHEIKSDID PQGIATEIIG 
LMDGLQMLWL RLPDSTDMGV LFSAYVARLI ASIEVAEKP