| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6250 |
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| Symbol | |
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| ID | 7381291 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 1240838 |
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| End bp | 1241614 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649713 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_002547937 |
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| Protein GI | 222107146 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.230305 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCGAAAT CCGTGGCCGT GGTAACAGGT GCCGCCGGTG ATATCGGGCG GGCAATTGCC
AGCCGTCTGG CCGCAAGCCA TGATGTGGTG GTGCTGGCCG ATATTGATGA GACCGCGGTG
AATGCGGCTG CGAAAACCCT CGGCAGTACG GAAAACTTCC TGCCGCTGGT CTGTGACGTC
ACCGACGAGG CGAGCATCAA TGCTCTGGCA TCTGCGGTGC AGGAGTTTGG GGTTACCAAG
ACCCTCGTCA ACAACGCCGG GGCGGCAAGG GCCGTCAGTC TGCACGATAC CGATGCTGCC
ATCTGGCGCC AGGATAATAC GCTCAATCTG GAAGCCGCAT TCCTGACCTT CAGGGCTTTG
GAAAATCAAC TGAAACAATC ACAAGGCGCG GTCATCAATA TTGCTTCGGT CAATGGCATG
GCCGTGTTCG GCCATCCCGC CTATAGCGCT GCGAAGGCTG GCCTGATCCA TCTGACCCGG
TTGATCGCGG TGGAATATGG GAAATTCGGC ATTCGTGCCA ATGCGGTGGC GCCCGGCACG
GTGCGCACCC AGGCCTGGGA AGCGCGCGCC GCTGCCAATC CTGCCGTGTT CGAAGAGGCC
AAGCGTTGGT ATGCCTTACA ACGGATCGCC ACGGCGCAGG ATGTTGCAAA TGCGGTGTTT
TTTCTGGCTG GTGATCAGGC TGCTGCCATT ACCGGCGTCT GCCTTCCCGT CGATTGTGGG
TTGACGGCAG GCCAAAGCGA ACTTGCCCGG ACATTTTCGC AGTCCGAGCA TTATTGA
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| Protein sequence | MAKSVAVVTG AAGDIGRAIA SRLAASHDVV VLADIDETAV NAAAKTLGST ENFLPLVCDV
TDEASINALA SAVQEFGVTK TLVNNAGAAR AVSLHDTDAA IWRQDNTLNL EAAFLTFRAL
ENQLKQSQGA VINIASVNGM AVFGHPAYSA AKAGLIHLTR LIAVEYGKFG IRANAVAPGT
VRTQAWEARA AANPAVFEEA KRWYALQRIA TAQDVANAVF FLAGDQAAAI TGVCLPVDCG
LTAGQSELAR TFSQSEHY
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