Gene Avi_6222 details

Gene Information

• Locus tag: Avi_6222
• Symbol: nnrU
• ID: 7381270
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 1217641
• End bp: 1218354
• Gene Length: 714 bp
• Protein Length: 237 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 643649692
• Product: denitrification regulatory protein
• Protein accession: YP_002547916
• Protein GI: 222107125
• COG category: [S] Function unknown
• COG ID: [COG4094] Predicted membrane protein

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.760958
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTGTGTGT TACGGGATGG TTCCGTGGCT AACCTGGTCC TTGCTTTGAT TTTCTTTGTG 
TTGACGCATT CCGTCCCGGC AATACCCAGC ATCAAAGGTC GGCTTGTCTC CCGTCTGGGC 
CGGACGACCT ATATGGTTCT TTATTCCATC CTTTCGCTGG CAGGCGTGCT GTGGATTTTC 
TACGCCTTCA TGGAAGCCGA TGATGTGGCA CTTTGGATGG ACAGGGCCTG GCAGGCATGG 
TTGACGCTGG TGCTCGTACC GATCGGTCTT TATCTGGTGG TGTGCGGATT GATCAGTCCC 
AACCCATATT CGGTGACCTT CAGATCAGGG CGAAAGCCTG GAGCCATCGT TTCGATAACC 
CGTCATCCGG TTTTGTGGGG TTTTTTTCTC TGGGCTTTCG GTCATATTTT TCCAAATGGT 
GAAATGCGTG GCGTTATTCT ATTCGGCGGA TTTTCGCTTT TCTCGCTGGT GGGAATGGCG 
ATACTGGACC GCCGAAACCG GAGAACTAAT GACGTAGCCG GCCCTGAATT GGGTGCCGCA 
ACGTCAGTTT TGCCTTTCGC CGCCATTCTG TCTGGCCGTG CCAGATTGCG TTTGGACCGC 
GACATGGCGA TCGCGCTTGT CCTGACCACA GCCGGCACCT TCGCTTTGCT GTTTGCCTTC 
CATGAAGTCT TGTTCGGTGT CGATCCCTTG CTGCTCGCGC TTTACGGGGT TTAA 

 

Protein sequence

MCVLRDGSVA NLVLALIFFV LTHSVPAIPS IKGRLVSRLG RTTYMVLYSI LSLAGVLWIF 
YAFMEADDVA LWMDRAWQAW LTLVLVPIGL YLVVCGLISP NPYSVTFRSG RKPGAIVSIT 
RHPVLWGFFL WAFGHIFPNG EMRGVILFGG FSLFSLVGMA ILDRRNRRTN DVAGPELGAA 
TSVLPFAAIL SGRARLRLDR DMAIALVLTT AGTFALLFAF HEVLFGVDPL LLALYGV