| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6218 |
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| Symbol | |
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| ID | 7381266 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 1214585 |
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| End bp | 1215184 |
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| Gene Length | 600 bp |
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| Protein Length | 199 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643649688 |
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| Product | ECF family sigma factor |
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| Protein accession | YP_002547912 |
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| Protein GI | 222107121 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.086452 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAGCA AATCCGGCCC CTTTGACGTG ATTGGACAAT TGGCAGCGCT GAGGCGTTAT
GCCCTGTCGC TTGTGCGCAA TGCCGATGAT GCCGAGGATC TCGTCAACGA CGCGCTGGTC
AGGGCCTATG AGCACCAGAA CAGTTTCCGG CGTGGCGGCA ATATTCGTCA CTGGTTGTTT
TCGATCCTGC ATAATACCCA CGTGGATAGC TTGCGACGCA GGCGATCTGC GGCAAGACGT
GATGCGCAGG CAGCCGATCT TGTCGATCCG GTTGTCGGTG CAGAGCAGGA GCATGTGGTG
CGGCTTGCCC AGGTGCGCCG CGCATTTCTG GACTTGCCGG AAGAGCAGCG GCAAGTCCTG
CATCTGGTGG CGATCGAAGA GCTTTCTTAT CAGGAGGCTG CGGAGGTTCT GGATATTCCC
ATGGGCACGC TGATGTCACG GCTGTCGCGG GCTCGGGCGC GGCTGCGCGA TCTTGAAATG
ACCGATGCTG GGCGCCGGGC ACTACCGCCA CCGATTGAGA AACCAGCCCA TAGAGGGCAG
GGCGGCTCAA AACCGGCTGG CCTTCGCATC GTTGGAGGTT CCGATGACAC ACCATCCTGA
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| Protein sequence | MNSKSGPFDV IGQLAALRRY ALSLVRNADD AEDLVNDALV RAYEHQNSFR RGGNIRHWLF
SILHNTHVDS LRRRRSAARR DAQAADLVDP VVGAEQEHVV RLAQVRRAFL DLPEEQRQVL
HLVAIEELSY QEAAEVLDIP MGTLMSRLSR ARARLRDLEM TDAGRRALPP PIEKPAHRGQ
GGSKPAGLRI VGGSDDTPS
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