| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6186 |
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| Symbol | |
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| ID | 7381241 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 1192103 |
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| End bp | 1193518 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643649663 |
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| Product | phage major capsid protein HK97 family |
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| Protein accession | YP_002547887 |
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| Protein GI | 222107096 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4653] Predicted phage phi-C31 gp36 major capsid-like protein |
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| TIGRFAM ID | [TIGR01554] phage major capsid protein, HK97 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.423125 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTATGA GATTCAACCC TGCCATCGCG CTCGGTCTCG TTCTTCTCTC CGCCCTCCTG
TTTCTTCTGG TCCTGGGTGG TGGTGCGCAT GCCGCCGCGA TCCTCCCTCT GGATGCGCAT
GTCACCGGCT TTGCCATGGT GATGACGGTT GCGCCGCAAC TCAATCATCG TGCGCGTGGT
CTGGTGATTG GTGTGCGCAA CGAAGGCGAT GCGCAAAAGA TTTTTGAAGA GCTGAAAAAG
AGCGTGGAAG CGTTCAAGGC TTCCCATGAG GAAGAATTGA AGGGCATCAA GAATAAGTTC
GCCGATGTCG TGACGACTGA GAAGGTCGAT AAGATCAACA ACGAAATCAC TTCGTTGCAA
AAGGCGCTGG ATGATGTCAA CGCCATGATG GCCGCCTCCA AGCTTGGCGG TGCTGGCGAT
GGCGTGGAAA GTGCTGATCA GCGCGAACAT CGCGGCGCGT TCAACAAGTG GTTCCGCAAA
GGCGCGGACG CTGGCCTTGC AGACCTTGAA GTCAAGGCGG CCTTGACGAC GCAATCTGAC
CCGGACGGCG GCTTTCTGGT GCCGACGCAA ACAGAAACCA CGATTGACCG GGTTCTCGGC
ACTGTCAGCA CCATGCGGCA ACTTGCGACC GTTATGCCGG TTGGCACGGA CACCTATACC
AAGTTCGTCA ACATGGGTGG GTCTGGCGCC GGTTGGGTCG GCGAGGAAGA GTCCCGCCCG
GAAACCGGCA CTCCGACCCT GCGTGAAATC GTGCTGACGG TCATGGAGCT TTATGCCAAT
CCGTTCACCA CGCAAAAGAT GTTGGATGAT GGCATTATCG ACATCGCCAC CTGGCTTGCC
GATGAAGTCA GCATTACATT TGCTGAAAAG GAAGGCGCCG CCTTCATCAG CGGCGATGGC
GTCAAAAAAC CACGCGGCAT CCTGGCTTAC GATACCATTG CCAATGCAAG CTACGCCTGG
GGAAGTCTTG GCTTCGTCGT TTCTGGCGGT GCAAGTGGGT TTGCATCTTC CGCGCCTGCC
GACGCCTTCA TTGATCTGTA TTATGGCCTG AAAGCCGGAT ACCGGACCAA CGCATCATTC
TTGACATCTG ATGCGACGAT GGGGTCGATC CGTAAAATGA AGGACGGTCA GGGGAATTAC
CTGTGGCGCG ACCCTTCCGC TCCTGGTGAA GTTCCGACAA TCCTCGGCAA GCCAGTTTAC
ACCGACGACA ACATGCCTGC CGTGGCAGCC AATGCGTTCC CTGTTGCCTT TGGTGACTTC
AAGCGCGGCT ATATGGTTGC GGACCGCACT GGCATCCGGG TTCTGCGCGA CCCATACACC
AATAAGCCAA AGGTGGGTTT TTATACCACC AAGCGCGTTG GCGGCGGTGT GACCAACTTC
GAAGCCATCA AGCTCCTGAA GATCGGCACA AGCTGA
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| Protein sequence | MSMRFNPAIA LGLVLLSALL FLLVLGGGAH AAAILPLDAH VTGFAMVMTV APQLNHRARG
LVIGVRNEGD AQKIFEELKK SVEAFKASHE EELKGIKNKF ADVVTTEKVD KINNEITSLQ
KALDDVNAMM AASKLGGAGD GVESADQREH RGAFNKWFRK GADAGLADLE VKAALTTQSD
PDGGFLVPTQ TETTIDRVLG TVSTMRQLAT VMPVGTDTYT KFVNMGGSGA GWVGEEESRP
ETGTPTLREI VLTVMELYAN PFTTQKMLDD GIIDIATWLA DEVSITFAEK EGAAFISGDG
VKKPRGILAY DTIANASYAW GSLGFVVSGG ASGFASSAPA DAFIDLYYGL KAGYRTNASF
LTSDATMGSI RKMKDGQGNY LWRDPSAPGE VPTILGKPVY TDDNMPAVAA NAFPVAFGDF
KRGYMVADRT GIRVLRDPYT NKPKVGFYTT KRVGGGVTNF EAIKLLKIGT S
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