| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6185 |
|---|
| Symbol | |
|---|
| ID | 7381240 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 1191239 |
|---|
| End bp | 1192093 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643649662 |
|---|
| Product | ClpP-type protease |
|---|
| Protein accession | YP_002547886 |
|---|
| Protein GI | 222107095 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0740] Protease subunit of ATP-dependent Clp proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.141561 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCTGC GAACCCTGCC TGAGGCAAAG ACGTTTACGC GCCCGCAAAA CTTCCAGTGG
GACGCGCCAA GCGACGTGCT GGCGAAGTGG GCCGATGGTC CGCAGGCCGC TGATGCGACA
GGTGAAAATA TTATCTCCAT CTTCGATGTG ATCGGTGAAG ATTACTGGTC AGGCGGCGGA
TTTACCGCCA AGCGGGCGGC TGCTGCGCTG CGACAGATTG GCAACAAGGA AGTGATTGTC
CAGGTCAACA GTCCAGGCGG TGACATGTTT GAAGGCATCG CCATTTACAA CATGCTGCGG
GCGCATCCGG GCAAGGTGAC AGTCAATGTT TTGGGGTGGG CCGCCAGTGC TGCCTCGATC
ATCGCCATGG CGGCGGACGA GATCGTCATG GGTCTCGGCT CGTTCATGAT GGTGCATAAT
GCCTGGGGCG CGGTGATTGG CAATCAACAC GATCTGCGCA CTGCGACGGA CCTTTTTGCC
GGGTTCGACA GTGCACTTGC CGACATTTAC GAAGCTCGTA CCGGCGCAAA GCGCAAGGAT
ATTGTTGCTT TGATGGATGC GGAAACCTTC ATGTCTCCAT CCGATGCCGT GAAAAATGGC
TTTGCGGATC GCGTTGATGA GGGGCTGAAA CTCTCCGGCG ATGCCTCGGC ATCCGCGAAG
GGCGATACGG TCAAGGCGCG CCGCCAAGTT GAGGCCGCGC TTGCCCGATC AGGATATTCC
AGAAGCCAGC GCTGCGAGCT TCTGGGTGAA ATGAACAGTT CCGGTGCCCA GCGTGATGCA
AGCACCTCCG CCGCGCGCGA TGCAGGCAAA TCCATGGTTG CCGCCCGGCA GCTAATCGAA
ATTTTCAAAC TCTGA
|
|---|
| Protein sequence | MSLRTLPEAK TFTRPQNFQW DAPSDVLAKW ADGPQAADAT GENIISIFDV IGEDYWSGGG
FTAKRAAAAL RQIGNKEVIV QVNSPGGDMF EGIAIYNMLR AHPGKVTVNV LGWAASAASI
IAMAADEIVM GLGSFMMVHN AWGAVIGNQH DLRTATDLFA GFDSALADIY EARTGAKRKD
IVALMDAETF MSPSDAVKNG FADRVDEGLK LSGDASASAK GDTVKARRQV EAALARSGYS
RSQRCELLGE MNSSGAQRDA STSAARDAGK SMVAARQLIE IFKL
|
|---|
| |