| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6147 |
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| Symbol | |
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| ID | 7381167 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 1167800 |
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| End bp | 1168834 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643649636 |
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| Product | Integrase |
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| Protein accession | YP_002547860 |
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| Protein GI | 222107069 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.236662 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACAGAC CGCCAAAATA CTGCCAGGGC TTTGAGGATC GGCATGGGAA AATTCGCTGG
TACTATCGGC GGAAAGGATT TCCGATCAAG CCCCTTTCAG GGTTGCCCTG GAGTCCAGAA
TTCATGGCCT CATACGAAAA GGCGATGGCC GGTGAAAAGA TAGAGGTTGG CAAATCCAAG
AGCGCACCCG GCACGGTCTC TGCGCTTGTC GTCAGCTATT ACAAAACATC TGATTTCCAG
AGGCTATCAG AATCCACCAA GACCACATAT CGCGGCATCA TCGAACGATT CCGGGAAGAG
CACGGTGCCA AGCGTGTACA TCACATGCAG GCCCAGAACG TCAAAAAAAT CATTGGGGAG
AAGGCAGCGA CACCAGCCGC CGCAAACAAT CTACTGCGGA TCATCCACAT ACTGATGCTG
CATGCTGTCG ATCTGCAATG GCGTCGGGAT GATCCCACCA AGGACGTGAA GAAAATCCGG
CACAAGTCCG AAGGCTTTTT AACCTGGGAG GAACACCACA TCGAACAATT CACCGCATAC
CACAAGCCAG GCACCCGCGC GCACTTGGCG CTATCGCTCC TGCTTTACAC AGGCCAGCGC
CGCAGTGACG TTGTCCGCAT GGGTCGCCAA CATGTGCGCG ATGGATGGAT TTCCATCGTC
CAGCAGAAGA CAGGCCAGTT GGTGGAGATC CCATTTCACG CCGCCTTCAA AGACGTGCTC
AATGCACTGC CCCTTAAGAA CATGACGTTT TTGACGACCG CTCAAGGCAA GCCATTCACT
CCGGCTGGCT TCACCAACTG GTTTCGAGAC ATGACAAAGG AAGCGGGCTT GCCGGACAAA
CTATCACCCC ACGGCCTACG CAAAGCCGCA TGCCGCAGGT TGGCCGAGGC CGGATGCACA
CCGCACCAGA TCATGGCCAT CAGCGGCCAC CAATCCCTGG ACGAAGTGAC CCGCTACACC
GTCGCCGCCA GCCGCCGCGA ACTCGCCACA CAAGCCGCCC CTCACCTTCA AGGCGGGGGT
AAAAGTAGAA CATAA
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| Protein sequence | MHRPPKYCQG FEDRHGKIRW YYRRKGFPIK PLSGLPWSPE FMASYEKAMA GEKIEVGKSK
SAPGTVSALV VSYYKTSDFQ RLSESTKTTY RGIIERFREE HGAKRVHHMQ AQNVKKIIGE
KAATPAAANN LLRIIHILML HAVDLQWRRD DPTKDVKKIR HKSEGFLTWE EHHIEQFTAY
HKPGTRAHLA LSLLLYTGQR RSDVVRMGRQ HVRDGWISIV QQKTGQLVEI PFHAAFKDVL
NALPLKNMTF LTTAQGKPFT PAGFTNWFRD MTKEAGLPDK LSPHGLRKAA CRRLAEAGCT
PHQIMAISGH QSLDEVTRYT VAASRRELAT QAAPHLQGGG KSRT
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