Gene Avi_6130 details

Gene Information

• Locus tag: Avi_6130
• Symbol: pcaB
• ID: 7380779
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 1148712
• End bp: 1149770
• Gene Length: 1059 bp
• Protein Length: 352 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643649622
• Product: 3-carboxy-cis,cis-muconate cycloisomerase
• Protein accession: YP_002547847
• Protein GI: 222107056
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG0015] Adenylosuccinate lyase
• TIGRFAM ID: [TIGR02426] 3-carboxy-cis,cis-muconate cycloisomerase

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCATTT CTCCTTTCGA ACACCCCTTC CTCTCCGGCC TGTTTGGCGA TGAGGCCTTT 
TCTGCCTTGT TTGCCGAGCA GGCAGATATT GCGGCCATGT TGTCCTTTGA GGCGGCGCTG 
GCCACGGCTC AAGGTGAGGC CGGGGTGATC GAAGTGGGGG ATGCCACGGC GATCCAGGCG 
GGCCTCGCCC GCTTCACAGC GGATCTCGAT GCCTTGAAAA CGGCCACGGC ACGCGATGGC 
GTGGTCATTC CCGAATTGGT CGGCCAGATG CGCAAAGCTG TCGGCGGGAC AAGCGCTGCA 
AAGCTGCATT TCGGTGCCAC CAGTCAGGAT GTCATCGATA CCAGCCTCGT GCTGCGCCTG 
AAGATGGCGG CGGAACACCT TGATGAGCGG TTGGCGGCAT TGATTGTCGG GTTTGAACAG 
CTCGATGCGG CATTTGGACA AAATGCGCTG ATGGGCCATA CCCGCATGCA AGCGGCCATC 
CCGATTACCG TTTCAGACCG GATCGCCGCT TGGGCTGGAC CTTTGCAACG ACACCAAGCC 
CGTCTGCGAG TTTTGCTCGC CGATGGTTTT GCCTTGCAAT TTGGCGGTGC TGCCGGAACA 
TTGGAAAAGC TCGGCGATAA AGGCCCTGCG GTGCGCGCCC GACTGGCTGA ACTGCTTGGC 
CTTGAGGATG CGCCCCAATG GCATAGCCAG CGCGACCGGA TCGTTGCCTT TGCCGATCTC 
CTGTCAATGA TCTCAGGCAG CCTTGGTAAA TTCGGCCAGG ACGTGGCGCT TCTGGCGGAA 
ATGGGTGGAG AAATTCAATT GACCGGCGGC GGCGGCTCCT CGGCCATGCC GCATAAGCAA 
AATCCGGTCG GGGCTGAAAC GCTGGTGACG CTTGCCCGTT TCAATGCCGT CCAGATCGCT 
GGCCTGCATC AAAGCCTTGT GCATGAACAG GAGCGGTCCG GCGCTGCCTG GGCCTTGGAA 
TGGTTGCTGC TGCCGCAGAT GGTTGTGGCG ACAGGGGCCG CCACAAAAAC CGGTCTGCAA 
TTGATCGTTG CCATTGCCCG GCTTGGCAAA TTGGCCTGA 

 

Protein sequence

MSISPFEHPF LSGLFGDEAF SALFAEQADI AAMLSFEAAL ATAQGEAGVI EVGDATAIQA 
GLARFTADLD ALKTATARDG VVIPELVGQM RKAVGGTSAA KLHFGATSQD VIDTSLVLRL 
KMAAEHLDER LAALIVGFEQ LDAAFGQNAL MGHTRMQAAI PITVSDRIAA WAGPLQRHQA 
RLRVLLADGF ALQFGGAAGT LEKLGDKGPA VRARLAELLG LEDAPQWHSQ RDRIVAFADL 
LSMISGSLGK FGQDVALLAE MGGEIQLTGG GGSSAMPHKQ NPVGAETLVT LARFNAVQIA 
GLHQSLVHEQ ERSGAAWALE WLLLPQMVVA TGAATKTGLQ LIVAIARLGK LA