| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6120 |
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| Symbol | pcaI |
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| ID | 7380770 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 1141227 |
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| End bp | 1141934 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643649613 |
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| Product | 3-oxoadipate CoA-transferase subunit A |
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| Protein accession | YP_002547838 |
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| Protein GI | 222107047 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1788] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit |
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| TIGRFAM ID | [TIGR02429] 3-oxoacid CoA-transferase, A subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.756785 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGATAAGA CTATCGCCAG CACGGCAGAC GCCGTTGCCG GTATACATGA TGGTGCCGTC
GTCATGATCG GCGGCTTTGG CGGCTCCGGC GCGCCTATTG AACTCATTCA CGCCCTGATC
GACAAGGGGC CGAAGAACCT GACGGTCATC AACAACAATG CCGGTAATGG CCGGATTGGC
ATCGCCGCAA TGATTGATGC GGGCATGGTC AAGAAGATGA TCTGCTCCTT TCCGCGCTCT
TCCGATCCAC GCGCCTTCAC TGACCGCTAT CTGGCCGGCG AAATCGAGCT GGAGCTGGTG
CCACAAGGCA CGCTCGCGGA GCGCATTCGC GCTGGCGGGG CTGGAATTCC GGCTTTCTAT
ACGCCAACCG GTTACGGCAC CGAACTTGCC GAAGGTAAGG TGATTGCCGA GTTCGATGGC
CGCCATTACG TACAGGAACG CTGGCTGAAG GCTGATTTCG CCATTGTCAA AGCCCATCTC
GGCGATTTGC ATGGCAACCT GACCTACAGC AAGGCTGGCC GCAATTTCAA TCCGTTGATG
TGCATGGCCG CGACCAAAAC CATAGTACAG GTTTCGAAGA TTGTTGCCCC TGGCGAGATC
GATCCCGAAA TTATCGTTAC GCCCGGCATT TTCATTGATG GCGTCGTTGA AGTCGCCAAT
CCGCAACAGG AAGAAGCGCT GATCCGCGCC GGAGTGGCCT ACGCATGA
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| Protein sequence | MDKTIASTAD AVAGIHDGAV VMIGGFGGSG APIELIHALI DKGPKNLTVI NNNAGNGRIG
IAAMIDAGMV KKMICSFPRS SDPRAFTDRY LAGEIELELV PQGTLAERIR AGGAGIPAFY
TPTGYGTELA EGKVIAEFDG RHYVQERWLK ADFAIVKAHL GDLHGNLTYS KAGRNFNPLM
CMAATKTIVQ VSKIVAPGEI DPEIIVTPGI FIDGVVEVAN PQQEEALIRA GVAYA
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