| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6069 |
|---|
| Symbol | |
|---|
| ID | 7380890 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 1087151 |
|---|
| End bp | 1088401 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643649567 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002547792 |
|---|
| Protein GI | 222107001 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTGA ATAGGACCAG TCCCAGTCGC TTGTCGCTTT CGACCGACCG GGGCGATATC
CTTGTGACCA TCGCCTTGGG GCTGACGCAA ATCATCGGTT ACGGCACGCT CTATTATAGT
TTCAGTATTC TCGCCCCCGC AATGGGTTTG GATCTTGGCT GGTCGAGCGA ATGGATTTTT
GCAACTCTTT CCGCTGCTCT GCTGGCAGGC GGACTGGTAG CACCCTGGGT AGGACGCATC
ATCGATGACC ATGGTGCAGG TCGGGTCCTG ACGGTGGGAT CGATGATCGC TGCGCTGTCC
CTGGCCGCCT GCGCGTTTGC GCCGGGCAAG ATTACATTTG TAATGGCGCT GATCGTCATT
GAGATGGCAT CGACCCTGGT ACAATATACG GCGGCTTTTG CCTTTCTTGT CCAGTTTCGG
CCGCAGAGTG CGCAACGGAA TATCACTTAT CTGACTTTGA TCGCCGGTTT TGCCTCGACG
ATTTTCTGGC CATTGACCTC GGCCCTTCAT GCCGATCTCA GCTGGCGGCA GGTCTATCTG
GTTTACGCGC TTCTGCATCT TGCCATCTGC TTGCCACTTC ATCTGTGGCT GGCAAGCAGG
GTGGGTGAGC GTCATGCACC AGTTGTCGCT CCCAGCGCCA CGTCACATCA TATCATGGAA
GGAGGGCTGC CCGACAGGTT GCGACCTATC GCCTTTCTCC TGATGGTGAC AGGTTTTGCG
CTTGAAAGCT TCGTGAATGC GGCTTTGCTC GTGCATATGG TGCCGCTGTT GACGGCGCTC
GGCCTTGGCT CCGCCGCTCT ATTGGTCGGA ACCCTGTTTG GTCCATCGCA AGTCCTCAGC
CGCTTCACCA ATATGATGTT TGGCCGCGAT CTGTCTCAAC TGACATTGGC ACTGGTTTCG
GCGCTGCTGA TGCCGGGGGC AGTTGCGGTG CTTTTGTTGA CGGCGCCATC CTTTTCAGGC
GCATTGATTT TTGCGGTCCT GTTCGGCTTG GGCTCCGGCC TTGGCAGCAT CGTCCAGGGA
ACCCTGCCGC TGGCATTGTT CGGCAGCGCC GGTTATGGCA GGCGCCAGGG GCACGTCACC
GCCGTTCGGT TGGTCGTGTC TTCGACGGCC CCTTTCGCTT TCGCATGGAT GATGGAAAAC
ATGGGTACGG ACCTGGCTCT TGCAATCAAC ACCGCCATTG GCGGTGTTGC GGTCCTCGCC
TTCCTGGCAA TTGCACATTT GGCCCAGCGT CAGCGCACAA TGCCAACATA G
|
|---|
| Protein sequence | MSLNRTSPSR LSLSTDRGDI LVTIALGLTQ IIGYGTLYYS FSILAPAMGL DLGWSSEWIF
ATLSAALLAG GLVAPWVGRI IDDHGAGRVL TVGSMIAALS LAACAFAPGK ITFVMALIVI
EMASTLVQYT AAFAFLVQFR PQSAQRNITY LTLIAGFAST IFWPLTSALH ADLSWRQVYL
VYALLHLAIC LPLHLWLASR VGERHAPVVA PSATSHHIME GGLPDRLRPI AFLLMVTGFA
LESFVNAALL VHMVPLLTAL GLGSAALLVG TLFGPSQVLS RFTNMMFGRD LSQLTLALVS
ALLMPGAVAV LLLTAPSFSG ALIFAVLFGL GSGLGSIVQG TLPLALFGSA GYGRRQGHVT
AVRLVVSSTA PFAFAWMMEN MGTDLALAIN TAIGGVAVLA FLAIAHLAQR QRTMPT
|
|---|
| |