| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6062 |
|---|
| Symbol | |
|---|
| ID | 7380885 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 1083165 |
|---|
| End bp | 1084274 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643649562 |
|---|
| Product | monooxygenase |
|---|
| Protein accession | YP_002547787 |
|---|
| Protein GI | 222106996 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2141] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.888466 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCACACC AGAAAAGAGA GCCGCTGAAA TTCGCCTATT GGGTTCCCAA TGTCTCCGGC
GGATTGGTCA TCAGTTCCAT CGAACAACGG ACCCATTGGG GGATAGAGTA TAACCGCAAA
CTGGCGCAGA TTGCCGAGCA GAGCGGCTTC GATTACGCCC TCAGCCAGAT CCGCTTCACC
GCCGGTTATG GCGCCGACAA CCAGCACGAA TCCGTGTCTT TCAGCCACGC CCTACTGGCG
GCGACTGAAA AACTGCGGGT TATCGCCGCC GTGCTTCCCG GCCCCTGGCA CCCGGCCCTG
CTTGCCAAGC AGATCGCCAC AATCAGCCAC CTCACCAACG GGCGCGTCGA TGTGAATATC
GTCTCGGGCT GGTTCCGGGG TGAATTTACG TCGATTGGCG AACCGTGGCT GGACCATGAC
GAGCGTTACC GTCGCTCAGA AGAATTCATC CGGGCCATTC GCGGCATCTG GACCGAGGAC
AGCTATAATC TGCGCGGCGA TTTCTATCGC TTCAACGACT ATTCCATGAA ACCGAAGCCG
GAAGGTGGGG TTCCACAGGT CTTCCAGGGC GGCTCCTCAC GCGCTGCGCG AGACATGGCG
GCCCGCGTGT CGGATTGGTA TTTCACCAAC GGCAATACGC CGGAAGGCCT GCAAGCCCAG
GTCGATGACA TCCGCGCCAA GGAAAAACTA TTCGGCAAAA CCTGGCGCAC CAGGATTGGC
ATGAATGCCT TCGGCATTGT CCGCGACACC GAGCAGGAAG CTCAGGACAC CCTGAAGGAA
ATCATCGACA AGGCCATTCC AGATGCCGTC AATGGTTTCA AGCATGAAGT TCAGAATGCC
GGCAACGCCT CGCCGGAGCG CGAAGGCAAT TGGGCAAAAT CCACCTTCCA GGATCTGGTC
CAATATAACG ATGGCTTCAA ATCCAACCTG ATCGGCACGC CGCAACAGGT CGCCGAACGG
ATCATCGAGC ATAAACGCGC CGGTGCGGAC CTGATCCTGA TGGGCTTCCT GCATTTCCAG
GAAGAGGTGG AGTTTTTTGG CAAAAAGGTC ATTCCGTTGG TGCGCGAACT GGAAGCGCGG
GAAGACGGCG CACTGCAAGC TGCCGAATAA
|
|---|
| Protein sequence | MPHQKREPLK FAYWVPNVSG GLVISSIEQR THWGIEYNRK LAQIAEQSGF DYALSQIRFT
AGYGADNQHE SVSFSHALLA ATEKLRVIAA VLPGPWHPAL LAKQIATISH LTNGRVDVNI
VSGWFRGEFT SIGEPWLDHD ERYRRSEEFI RAIRGIWTED SYNLRGDFYR FNDYSMKPKP
EGGVPQVFQG GSSRAARDMA ARVSDWYFTN GNTPEGLQAQ VDDIRAKEKL FGKTWRTRIG
MNAFGIVRDT EQEAQDTLKE IIDKAIPDAV NGFKHEVQNA GNASPEREGN WAKSTFQDLV
QYNDGFKSNL IGTPQQVAER IIEHKRAGAD LILMGFLHFQ EEVEFFGKKV IPLVRELEAR
EDGALQAAE
|
|---|
| |