| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6017 |
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| Symbol | |
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| ID | 7380844 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 1022337 |
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| End bp | 1023857 |
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| Gene Length | 1521 bp |
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| Protein Length | 506 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649519 |
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| Product | polysaccharide efflux transporter |
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| Protein accession | YP_002547750 |
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| Protein GI | 222106959 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAATG GAATAGTCGC AAATTCCGCG TTCAATGCGG CGGCAGGATT GACCCTGCTG
GCGACAGGAT TCATATGCTC GATCTTCACG GCACGGGTTC TTGGGCCGGA AGCCAATGGC
ATCATTGCCT TTTCCGTCTG GCTAGCCTCA ACAGCGGCGC TGGTGGCGGA ACTTGGCACC
GGTGTGCTTT TATTGCGTCT TCTGCCGCAG TTGAAGGGGC AGGGCTATGG CGAAAGCGAC
CGTAAAGGTT TCGCTGCCTA TCTGCTCTGG CCGGTGGTTG GCTCGACATT GCTGTTGCTG
ACGTTCTATT TCCTGTTTTT CTGGGTGGCG GAGGCCAGGC ATTGGGCAGA AACCGCGCCT
GAAGTGCTGG TGGTGACGGC GCTGTTGTTT GCCACGCAGG CCATCGGGAT GTTTGCCAAG
AATTACCTGA TCGGCGAACA GCGGGTGGAT ATTTTCTTCC GTATGACCTT GACGGCCGGG
CTGCTGCAAC TGGTCGGTGT CATCGCGGGT ACCTTGCTGT TCGGCGTGCC AGGAGCGCTG
TTTGGCTATG TTCTGGCCTA TATTTCCCAG TTTCTCTTCG CCGCCGCCCT GTTGCGCCAC
AAGGTGAAAA GCTGCGGCAT CGGACTGAGT TACCTGCTCG GATCCTCCTT TGTGCTCTCA
CTGGAATTCA TGGTGGATTC GATCTTCCTG AACCGGATCG AGCTGTTCTT CCTGCAACGC
TATCAGGGCA TTGAGACCGT CGGCTATTAT TCCGTGGCCT TCTCGCTGAC CAATCTCGCT
TTGCAGGTGC CGATTCAGCT GTCCGGCAGT CTCGTGCCTT ATTATGCCGA ACATCTGCAC
CGCGCGCCGG GCGGACGGTT GCCTGTGGCG ATGTTTGAAA GCGTGGTGCG AAGCCTGGCC
TATTTCACGC TGCCGATGAG CCTGGGCCTG GCGGCGGTGT CGCATCGGCT GGTCACGCTG
GTGTTTGGCG ATGCCTTTGC CCCAAGCGCG CCGATGCTGA CGCTGCTAGC GCTGTCTGTG
CCAGTTGCCG TTGCCTGTCA GGTGGCGACA CAATATCTGT TTGCCCTCGA TAAAATCCGG
CAGAGACTGT TTGTCGGGCT GGGCGGTGCG TTTATCATGC TGGTCGGGGA TGTTTTGCTT
GTGCCATCTT ATGGCGGAGA AGGTGCGGCT TTCGTGCGGA TCGTGGTGTT TACCGCTATG
AGCCTGGCGA TGCTGCGCTG GATGCGGTTC GAAGGGTCAT TGGCGCCGCT GGGGTTCAGT
CTTTTCAAGG TTACTGTAGC CGCTGGCTGT TGTGCGGCAG CGGCTTTGGC GGTGCAGGAT
GTCGTGCCAG GTGTCGGTGG CCTTGTCCTT GCCATTATCG GTGCCGTCAG CGTCTATTGC
CTTGCGCTTC GGCTGTTGCG GGCCGTGCCG GAGGCGGATG TGGCGGTCAT GGCAGGGCTG
ATCGCCCGTT TGCCAAACCG GCTGGCGGGG CCTTTGAATG TGGTTTTGAG GTTGCTGACC
GTGACACCCA ACCGGAGCTG A
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| Protein sequence | MSNGIVANSA FNAAAGLTLL ATGFICSIFT ARVLGPEANG IIAFSVWLAS TAALVAELGT
GVLLLRLLPQ LKGQGYGESD RKGFAAYLLW PVVGSTLLLL TFYFLFFWVA EARHWAETAP
EVLVVTALLF ATQAIGMFAK NYLIGEQRVD IFFRMTLTAG LLQLVGVIAG TLLFGVPGAL
FGYVLAYISQ FLFAAALLRH KVKSCGIGLS YLLGSSFVLS LEFMVDSIFL NRIELFFLQR
YQGIETVGYY SVAFSLTNLA LQVPIQLSGS LVPYYAEHLH RAPGGRLPVA MFESVVRSLA
YFTLPMSLGL AAVSHRLVTL VFGDAFAPSA PMLTLLALSV PVAVACQVAT QYLFALDKIR
QRLFVGLGGA FIMLVGDVLL VPSYGGEGAA FVRIVVFTAM SLAMLRWMRF EGSLAPLGFS
LFKVTVAAGC CAAAALAVQD VVPGVGGLVL AIIGAVSVYC LALRLLRAVP EADVAVMAGL
IARLPNRLAG PLNVVLRLLT VTPNRS
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