| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5963 |
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| Symbol | |
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| ID | 7381047 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 979840 |
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| End bp | 980589 |
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| Gene Length | 750 bp |
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| Protein Length | 249 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643649475 |
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| Product | transcriptional regulator GntR family |
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| Protein accession | YP_002547706 |
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| Protein GI | 222106915 |
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| COG category | [K] Transcription |
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| COG ID | [COG2188] Transcriptional regulators |
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| TIGRFAM ID | [TIGR02018] histidine utilization repressor, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATGACTG AAGAGATAGA CACACGCAGC AAATCGCTGC ACCAGCGTAT TCTGGATGAC
ATTGAGAGCA ATATTCTCTC AAGTCGATGG CCGCCGGGCC ATAAAATTCC GTCCGAGCAA
GTGCTGGCCG AGACATATGC CTGCTCACGC ATGACCGTCA ACAAGGTGCT GACCCAGCTT
GCTCGCGCTG GCCTTGTGCT GCGCAAGCGC AAGACCGGCA GCATCGTCAT GCCGCAGAAC
TCGCAAAGCG CCATTCTGGA AATTTACGAC ATCCGTGATG AGGTCATCGC GTTAGAGAAG
ACCTACCATC ACCGCATTCT GTCGCGAACC ATCCACCCTC CGACCAAGAC AGAGTGTGAA
AACCTGTCTC TCGCACCACG CCGCAAGCTG CTGACCCTCG CCTGTCTGCA TTATGCTGAT
GATAGTCCTT TCTGCCTTGA AGAACGTATC ATCAACCTCG GCGTGGTGCC GCAGGCAGCG
GATGCTGATT TTGCCGATCT GGCTCCCGGT CCGTGGCTTT TGACGCACAT TCCATGGAAC
GCCGCAGAGC ACCGCATTGC CGCCGAAGCT GCCAATGATG CAGCGGCCAA AACCTTGGAT
ATTGCCGCCA ACACCCCGGT TCTGGTGGTG GAGCGCCAAA CATGGCGGCT GGATGAAACC
GTCACCCAGG TGCGCCTGAC CTATCCCGGT GCCAGCCATG CCGTTACCGC CCGCTTCACC
CCATCCCAAC GCGTTATGAC CCCAGCCTGA
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| Protein sequence | MMTEEIDTRS KSLHQRILDD IESNILSSRW PPGHKIPSEQ VLAETYACSR MTVNKVLTQL
ARAGLVLRKR KTGSIVMPQN SQSAILEIYD IRDEVIALEK TYHHRILSRT IHPPTKTECE
NLSLAPRRKL LTLACLHYAD DSPFCLEERI INLGVVPQAA DADFADLAPG PWLLTHIPWN
AAEHRIAAEA ANDAAAKTLD IAANTPVLVV ERQTWRLDET VTQVRLTYPG ASHAVTARFT
PSQRVMTPA
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