| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5954 |
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| Symbol | |
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| ID | 7381039 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 970177 |
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| End bp | 970836 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643649467 |
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| Product | transcriptional regulator TetR family |
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| Protein accession | YP_002547698 |
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| Protein GI | 222106907 |
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| COG category | [K] Transcription |
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| COG ID | [COG1309] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCTCA ATATGTGGAT GCATCAGCAT CTTCGATGTA TTCCGACCAG AGAACCCATG
CGGACAAAAA GCGAGACGAA ACGACGCCAG ATCCTGACGA TTGCCGGGAA TCTGTTCCGG
GAACACGGAT TTGGCGCCGT TAATATGGCG CAGATCGCGG CCTCGGTCGG CGGATCGAAA
TCGACCCTTT ACAATCATTT CCCCTCCAAG GAAGCCTTGT TCGAAGCCTA TGTGATTGAA
GCAGGGCGCG AACCCTTTGC AGCTCTGGCC GATAGCAATC AGGCTGGCGA CAATGTGGAA
AAATCGCTGA CGGCCTATGC GCGCGCCTAC CTGCGGCTAC TGCTGTCGCC GGAAGTTCTC
GCCATCAACC GGCTGGTGAT TGCCGAAGCG CCACGTTTTC AAGAGCTTGG CAGGATCTTC
TATCAGAATG GACCCCGGGC CACGCTGGAC CAGATCGAAA AAAAGCTGGA GCATCTGGTC
GAACGCCAGG CGCTTGCCAT CCCGGATATC GCAATGGCGG CCTTACAGTT CAAGGCAGTG
GCCGAGGCGG GTCTTTATGA ACACTGCCTC TGGGGCCTGA TTGATCGCCC GAATGACGCG
CAAATCGAGA CCGCAGCGAA AAATGCCTCC ACCACCATCC TGACGCTTTA TAGCCGCTGA
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| Protein sequence | MILNMWMHQH LRCIPTREPM RTKSETKRRQ ILTIAGNLFR EHGFGAVNMA QIAASVGGSK
STLYNHFPSK EALFEAYVIE AGREPFAALA DSNQAGDNVE KSLTAYARAY LRLLLSPEVL
AINRLVIAEA PRFQELGRIF YQNGPRATLD QIEKKLEHLV ERQALAIPDI AMAALQFKAV
AEAGLYEHCL WGLIDRPNDA QIETAAKNAS TTILTLYSR
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