| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5952 |
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| Symbol | |
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| ID | 7381037 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 966710 |
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| End bp | 968581 |
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| Gene Length | 1872 bp |
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| Protein Length | 623 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643649465 |
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| Product | membrane protein |
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| Protein accession | YP_002547696 |
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| Protein GI | 222106905 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1289] Predicted membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCCAG CGACAAAAAA CACAACATGT GGTGATGTAA ACCGGTGGCG GCGTCGATTT
GTTTTCTTAA AAGGCCCCAG CGTCAGCTTT GCCTTGCGCA CCACCATTGC CGCCATTCTT
GCCATGGCGC TGGCCACTTT GCTGCAAATT CACCATCCCT ACTGGGCGGC AATGACCGTG
TGGCTGGTCG CTCAGCCCAC CCGTGGCCTG GTGGTCGAGC GGGGGCTGGC GCGTCTGGTT
GGCACTATCA TCGGGGCACT TGTCGGTTTT CTAATGCTTT GGCAATTGAG CGCTGCACCC
GGGCTGCAGC TGTCGGTGCT GATTTGCTGG GTTGCGCTGT GTGCCGCGGC TGGGTCGTTC
TTTCGCCACT TCCGCTCCTA TGGGCTTTTA TTGGCCGGCT ATACCGCTGC CGTCGTTACC
ATGTCGGGTC TGATCGAGCC CCAGCTTGGC CATGAACTTG CCTGGTCACG GATCGCCTGT
ACCCTGATAG GCGTGGTGGC TTCGCTTGTC GCCACGGTGC TTTTCGCGCC GGGGGCGACC
AAGGACATGG TTCATACCCG CTCGCTGGCA CTTCTGCGTC AAGCTCTGTC GCTTTCGGCG
ACCTTGCTGA AAACCCGTGA GGAGACTGTG GGTGAACCCG TGCAACAGTT CTTCTCTGCG
GTGGTCCAAA TGGACGCCGA TCTCGATACA TTGGCCGCGG GCTCGCTCAC AGGGCACCAG
CGCGCCCGGT TCGCCCGTCA CATTGCCGCC GCCTCGACAA TTCTGGTCAC TGAAGCGATG
ACCGCCCGCC AACTCGAGGA ACCGCAGGTG AGGGCGGAAA AGACCGCCGA CACATTGGCC
TTCGTCGATC AGGCGCTTGG GCGTGGTGAT ATCGAGGCTG CCCACGCTGC CGTCACGGCA
ATTGGCGATC ATGCCCCGCA ATTGTCCGCA GCCGTGACCG CTGCGATCAA TTATTTGGGT
GAGCTTTCCG CTGTCCAGCC GGTCAATCGC CTGCTGGACC TCAATGCCTT GCGCATTTCG
GACAAAAGGG CGGCAGCAAT TGCCTTTTGC CGGACTTTTC TTGCGCTGAG CGCGGTGGCC
CTGGTCTGGA AGCTTACCGG CTGGTCACTG GGTCCGGTCA TGCTCATGAC GGCTGCCGTA
TTCGTGACGC TGTTTTCAAG CCATGAAGCA CCTCAGCTCG CGGTTGGTGA GGCATTGAAG
GGGACGCTGT GCGGCGCAAC GCTTGGCATG TTCTCTCGGA TCTTTCTGCT GCCGCATGCG
GAAAATTCGC TGGACATGCT GTTGATGGTG GCGCCTTTCC TGGCAGTGGG CGCCTATGCC
ATGTCGCGTC CGAAAACCGC CAAAGCGGCC ATTGATGGCA ACATGTCCTT TCTGCTCGCC
GCCCAGCCGG TTTTTCCGGT GGCGGTATCG CCCTGGCTTG CGGTCGAACA GACCTTGGCG
ATGGTGGCGG GCGTGGCGGC GGCGGCACTC GCCTTCCGGT TTGTTTTTCC GGTCAATCAC
CGGCTGGTGC TGACAGTGCT GCGCAACCGT TTGACGGAGG ATCTTGAGGT CACGGCCCGG
CTTGCAAGCC ATGAACAGGT GCTGCAACGC CGCTTCAGAA TGATCCAGCG CATCCTGCGC
ATGGGAAGTC TGCGGCTTGT TGCGCCTTCA GAAACCAGCC GGGACGTGTA TCTGCTTCTC
TGCCTTGTGA CCATGCTTGG CCGTCTTCTG GAGCGGCGCG GGCGCGATGA CATCGCCTCG
CTCGACAGGC GCTATGTCGA CTTTGCACTC GAAGCACTGA AAGCGGCTCC TGAAAACTGG
GAGCACCACC ATTCGGTCTT CTCGACCCTT CTGAAACGGG ATCCGGTCCT GGTTCCCCAC
GCATCCCTTT GA
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| Protein sequence | MSPATKNTTC GDVNRWRRRF VFLKGPSVSF ALRTTIAAIL AMALATLLQI HHPYWAAMTV
WLVAQPTRGL VVERGLARLV GTIIGALVGF LMLWQLSAAP GLQLSVLICW VALCAAAGSF
FRHFRSYGLL LAGYTAAVVT MSGLIEPQLG HELAWSRIAC TLIGVVASLV ATVLFAPGAT
KDMVHTRSLA LLRQALSLSA TLLKTREETV GEPVQQFFSA VVQMDADLDT LAAGSLTGHQ
RARFARHIAA ASTILVTEAM TARQLEEPQV RAEKTADTLA FVDQALGRGD IEAAHAAVTA
IGDHAPQLSA AVTAAINYLG ELSAVQPVNR LLDLNALRIS DKRAAAIAFC RTFLALSAVA
LVWKLTGWSL GPVMLMTAAV FVTLFSSHEA PQLAVGEALK GTLCGATLGM FSRIFLLPHA
ENSLDMLLMV APFLAVGAYA MSRPKTAKAA IDGNMSFLLA AQPVFPVAVS PWLAVEQTLA
MVAGVAAAAL AFRFVFPVNH RLVLTVLRNR LTEDLEVTAR LASHEQVLQR RFRMIQRILR
MGSLRLVAPS ETSRDVYLLL CLVTMLGRLL ERRGRDDIAS LDRRYVDFAL EALKAAPENW
EHHHSVFSTL LKRDPVLVPH ASL
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