| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5937 |
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| Symbol | exoF |
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| ID | 7381027 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 955822 |
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| End bp | 957102 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643649455 |
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| Product | exopolysaccharide production protein |
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| Protein accession | YP_002547686 |
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| Protein GI | 222106895 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGGCTT ACGGATTTGC TGGAGGATTT CGGTCATCCA CGCGCATTAC GACCTTGAAC
GTTGCAGCAC TCGCGCTTTG CCTGTCCTTG GCTGTGCCGG GATTGGCATT GGCAGATGAC
TATCGTTTGG GTGTAATGGA CAAGATCCGC GTTCGGGTGG CGGAATGGCA GACGGCCGAG
GGCGCCGTAC GGGACTGGGC CGCCGTCAGT GGCGACTATT CTGTCGGGGC TGCGGGCCAG
GTGTCTCTGC CCTTCATTGG CGAGTTGCCG GCCTCGGGCA AGACCACCGC CGACGTTGCC
GATGAGATCG GCAAAAAGAT GCAACAATTG TTCGGTCTCA GTGATCGACC GTCCGCATCG
GTTGAAATTT CCGAGTATCG CCCCGTCTAC ATGGCTGGTG CAGTTCAGTC GCCGGGTGAA
TATCCCTATG CACCGGGTAT GACTGTGTTG AAGGCGCTCA GTGTCGCAGG CGGCTTGAAG
CGCGCCGATG CTGGCCAGCG TTTTGCGCGT GATTTCCTTC AGGCACAGGG GGATGGCGCC
GTTTTGGTCT CCCAACGCAA CCGTTTGTTG GTCCGTCGTG TGCGCGTTCT TGCGGAAATG
AATGAAAAAG AGACGATAGA AATTCCCGAG GAATTGAAAT CCATTCCCGA CATCAACCAG
TTGGTTGAGT CGGAAGCGGC CTTGATGAAT TCCCAAACCG CCAAGCTCAA GGTTCAGTTG
TCATCCCTTG CCGACCTTAA GACTTTGCTT GCGGCTGAAA TCGAGGCTCT TGGTAAGAAG
TCAGAAACCC AGACCCGCCA GTTGACGATG GTTCAGGAAG ACCGCGACAA GGTCAATAGC
TTGAGCGAGC AGGGCCTGGC GCTGAGTTCG CGTCGTTTGG CGGTCGAGCA GCAGGTGTCG
GATTTGCAGT CGGCACTTCT GGATATCGAT ACCAACACGC TGAAGGCCAA GCAGGATCTG
AACAAGGCCC AGCAGGACGA GACCACGACG CGCAACGATT GGGATGCACA GCTTGCCCAG
GAATTGCAGG ATACCGAAGC TGAGCTGGAC CAGATTGCGT TGAAGCTTTC CACCAGCCGT
GGCCTGATGG CCGAATCCTT GCTGCAATCT TCGGAAAGCG CCAGTGCCAA GACTGCCGAT
GGCGAAGCCA ATGTCGCTTA TTCCATCGTC CGCGAAAAGG ATGGGAAGCC CACCGAAATC
GCTGTCGACG AAAATACCTC GGTGACGCCC GGCGATGTGA TCAAGGTTAC GGTAAAGCTG
TCTCAGCCAG CCATGCGGTA A
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| Protein sequence | MKAYGFAGGF RSSTRITTLN VAALALCLSL AVPGLALADD YRLGVMDKIR VRVAEWQTAE
GAVRDWAAVS GDYSVGAAGQ VSLPFIGELP ASGKTTADVA DEIGKKMQQL FGLSDRPSAS
VEISEYRPVY MAGAVQSPGE YPYAPGMTVL KALSVAGGLK RADAGQRFAR DFLQAQGDGA
VLVSQRNRLL VRRVRVLAEM NEKETIEIPE ELKSIPDINQ LVESEAALMN SQTAKLKVQL
SSLADLKTLL AAEIEALGKK SETQTRQLTM VQEDRDKVNS LSEQGLALSS RRLAVEQQVS
DLQSALLDID TNTLKAKQDL NKAQQDETTT RNDWDAQLAQ ELQDTEAELD QIALKLSTSR
GLMAESLLQS SESASAKTAD GEANVAYSIV REKDGKPTEI AVDENTSVTP GDVIKVTVKL
SQPAMR
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