| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5882 |
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| Symbol | |
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| ID | 7380652 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 892196 |
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| End bp | 893077 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643649402 |
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| Product | polysaccharide deacetylase family protein |
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| Protein accession | YP_002547639 |
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| Protein GI | 222106848 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAAGG AAATCTTTTG CAGCTTCGGC ATCGATGTGG ATGCGGTGGC CGGCTGGCTC
GGCTCTTACG GCGGCGAGGA TTCGCCTGAC GATATTTCCC GTGGTCTGTT TGCCGGTGAG
GTCGGCGCAC CGCGCCTGCT GAAATTGTTC GAACGCTTCG GTATCAAGAC CACCTGGTTC
ATTCCCGGCC ATTCCATCGA GACCTTCCCG GAACAGATGC AGGCTGTGGC CGATGCAGGC
CATGAAATCG GCATTCATGG CTATACCCAT GAAAACCCGA TTGCCATGAC CCGCGAACAG
GAAACCGAGG TGCTGGACAA GTGCATCGAG CTGGTCACAA GGCTGTCGGG CAAGCGCCCG
ACCGGCTATG TCGCGCCCTG GTGGGAATTT TCCAATGTCA CCAATGAATT GCTGCTGGAG
CGGGGCATCA AATACGACCA CTCGCTGATG CATAATGATT TTACGCCCTA TTATGTGCGC
GTTGGCGATA GCTGGACCAA GATTGACTAT TCCAAGAAGC CCTCCGACTG GATGGTGCCT
TTGAAGCGTG GCCACGAGAC CGACCTGATC GAAATTCCGG CCTCCTGGTA TCTCGATGAC
CTGCCGCCGA TGATGTTCAT CAAGAAATCA CCCAACAGCC ACGGCTTCGT CAATCCGCAT
GATATCGAGC AGATCTGGCG CGACCAGTTC GATTGGGTCT ATCGTGAAAT GGATTATGCG
GTTTTCCCGA TCACCATTCA CCCTGACGTT GCCGGACGCC CGCAGGTGTT GATGATGCTG
GAGCGGTTGT TTGCCCATAT GAGCAAGCAT CCGGGGGTGA AATTCGTGAC CATGAACGAG
ATCGCCGACG ATTTCGCAAA GCGCTTTCCG CGCAAGAAGT AA
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| Protein sequence | MAKEIFCSFG IDVDAVAGWL GSYGGEDSPD DISRGLFAGE VGAPRLLKLF ERFGIKTTWF
IPGHSIETFP EQMQAVADAG HEIGIHGYTH ENPIAMTREQ ETEVLDKCIE LVTRLSGKRP
TGYVAPWWEF SNVTNELLLE RGIKYDHSLM HNDFTPYYVR VGDSWTKIDY SKKPSDWMVP
LKRGHETDLI EIPASWYLDD LPPMMFIKKS PNSHGFVNPH DIEQIWRDQF DWVYREMDYA
VFPITIHPDV AGRPQVLMML ERLFAHMSKH PGVKFVTMNE IADDFAKRFP RKK
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