| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5873 |
|---|
| Symbol | |
|---|
| ID | 7380645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 885184 |
|---|
| End bp | 886257 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643649395 |
|---|
| Product | ABC transporter nucleotide binding/ATPase protein |
|---|
| Protein accession | YP_002547632 |
|---|
| Protein GI | 222106841 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACATCCG TGCTCGAGCT ACATAATCTG GTCAAGACCT ATGGCGACAC ACGCGCCCTG
GATGGCTTGA GCCTTTCGCT GCCCGACAAT CATTATATTT CTCTACTTGG CCCAAGCGGA
TCGGGAAAGA CAACACTGCT CCGGGTGATT GCCGGTTTCG AGCGCTGCGA GGGCGGTTCT
ATCCGCTTTG CCGGACAGTC GATGCAGGAC GTGGCGCCGC ATCGCCGTGG CATCGGCTTC
GTCTTTCAGA ATTTCGCGCT GTTTCCACAT CTGAGTGTGC GGGAAAATAT CGCCTTCGGC
CTTGCCAATC GTGAGGTGGC ACCGGTGACC AATGCTGGCG AAGTGGCCGA CAGGGTGCGT
GACATCATCG CGCTTGTTGG CTTGCAGGGC TTGGAAACCC GCGCCGTTAC CCAGATTTCC
GGTGGCCAGA AACAGCGTGT TGCCTTGGCC CGCACCCTGG TTACAGAGCC GAAAATGGTG
CTGCTGGACG AACCGCTTGG CGCACTGGAC GCCAATCTGC GCGCCCGGAT GCGCAATGAG
TTGCGCGACA TCCGCGAGCG CTGCGGCGTT ACCTTCCTGC ATGTTACCGG CAGCGAGAGC
GAGGCGCTGG CCATGGGCGA CATGGTTCTG GTGCTGGATC GTGGGCGGAC TGCCCAGACC
GGCAGTTCGG ACACGATCTA TAACCGTCCC ATTTCCGCCG ATGTGGCGCG CTTCCTGAAT
TGCTACAATC TGTTTTCCGG CGCTGTGGAT GGCAACAGTT TCGTTGCCCC AGCAGGCCGC
CTGCCGCTCG GCGGTTTCAG GCAATCCGCT TCGACACCCG CCTACGCCAT TCGCCATGAC
CGCATCTCCA TCCGTCCTGT TATCGCCGAG CGCGGCAGTG ATGAAGTGGC TATCGAAGCC
AGCTTTCTGG CTGAGGAATA TACCGGTTCG GCGGTCTATT CGTTTTTCTC GGCCGATGAC
GGCTCTGTCT TCGAAGTGGA AACCCATTTG AGCAAGGACG CCCGCCCGAT CCTCGAACCG
CAGACCCGCT ACGCGCTGGT CTGGAACAAG GAGCACGCCC TTGTCTATGC ATAA
|
|---|
| Protein sequence | MTSVLELHNL VKTYGDTRAL DGLSLSLPDN HYISLLGPSG SGKTTLLRVI AGFERCEGGS
IRFAGQSMQD VAPHRRGIGF VFQNFALFPH LSVRENIAFG LANREVAPVT NAGEVADRVR
DIIALVGLQG LETRAVTQIS GGQKQRVALA RTLVTEPKMV LLDEPLGALD ANLRARMRNE
LRDIRERCGV TFLHVTGSES EALAMGDMVL VLDRGRTAQT GSSDTIYNRP ISADVARFLN
CYNLFSGAVD GNSFVAPAGR LPLGGFRQSA STPAYAIRHD RISIRPVIAE RGSDEVAIEA
SFLAEEYTGS AVYSFFSADD GSVFEVETHL SKDARPILEP QTRYALVWNK EHALVYA
|
|---|
| |