| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5871 |
|---|
| Symbol | |
|---|
| ID | 7380644 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 883655 |
|---|
| End bp | 884653 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643649394 |
|---|
| Product | transcriptional regulator GntR family |
|---|
| Protein accession | YP_002547631 |
|---|
| Protein GI | 222106840 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1802] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGACAC AAACCGGCCA ACGCCGCTAT GAAATTGCCG AGGCGGTGCT GCGCTCCAAC
ATCGCCGAAG GCCTGTTGCC TCAAGGGCTT GTGCTGTTGG AAGGCCATAT CGCCGAGATC
CTGCAAACGT CCCGCGCACC GGTACAGCGC GCCTTGCAGG CGCTGGAGGC AGACGGGCTG
GTGCATAGGT TTCACGGGCG CGGCTATCTC GTCGGCCCGA CAGGGTTTGG CATAGAGCCG
TTGAGAACCG ATATCCGCAG CATTGGCCTG ACCGTCGCCA AACATGCCGA CGACGCTTTG
CAGAACCGGT CCTCCTGGGA GCGGATTTAC GACACCGTTG AGCGCGATGT GGCCGGATGC
GTGGTGTTTG GTCGCTACCG GATCATTGAG ACCGAACTTG CCAGCCATTT CAATGTCAGC
CGCACGGTGG TGCGCGATGT GCTGGCGCGG CTGAGCGAAC GAGGACTGGT GCGCAAGAAC
CAAAGCTCCC ATTGGATCGC TGGCCCGTTG ACCGCCCAGA CCATCAAGGA CCATTTCGGG
CTGCGCGCCA TGCTGGAGCC GCAGGCATTG ACGACGGCTG CCCCCCATAT CGACAGTGAG
GCGCTGCTTT GCCTGCTGGA ACGGCTTCGG CAGTTGGAGA GGGATCATGC CGGGGATGGC
CTCAGAGATG TCATGGAGAT GCAGCAAGGC TTCATCGACA TCTGCATTCT CGCCACGCCC
AATGAGAAGC TGCGCGAATT GATCCGCAAC AATCTTCTGC CAGTGACGGC GGCGACCAGC
CTGCTGGCCC GCCTCGGCCT GCCAGGCGAC CTGACGACGA TTACCGAATT TAGGCTGATC
GTCGAGTTGC TGGCCCGTGG GGCGACCACA GCGGCGGCGG CCATGCATGG CACCCATCTG
GACGCTGCCC TGAACCGGAC CATCGCCCAG ATGAAGATCG TCGCGATCAT TCCCGATCCC
GGCGCCACGG CGGCCTATCT GACCCGCGTT CAGGAATGA
|
|---|
| Protein sequence | MTTQTGQRRY EIAEAVLRSN IAEGLLPQGL VLLEGHIAEI LQTSRAPVQR ALQALEADGL
VHRFHGRGYL VGPTGFGIEP LRTDIRSIGL TVAKHADDAL QNRSSWERIY DTVERDVAGC
VVFGRYRIIE TELASHFNVS RTVVRDVLAR LSERGLVRKN QSSHWIAGPL TAQTIKDHFG
LRAMLEPQAL TTAAPHIDSE ALLCLLERLR QLERDHAGDG LRDVMEMQQG FIDICILATP
NEKLRELIRN NLLPVTAATS LLARLGLPGD LTTITEFRLI VELLARGATT AAAAMHGTHL
DAALNRTIAQ MKIVAIIPDP GATAAYLTRV QE
|
|---|
| |