| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5862 |
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| Symbol | attK2 |
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| ID | 7380637 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 876697 |
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| End bp | 878154 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643649387 |
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| Product | succinate semialdehyde dehydrogenase |
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| Protein accession | YP_002547624 |
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| Protein GI | 222106833 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR01780] succinate-semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.211994 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATAATC TCAAAGACAA GACCTTGCTG CGCCAGCAGG GCCTGATTGG CGGCGAATGG
GTCGGTGCGG CCTCCAACAA GGTGATCGAC GTTATCGACC CGGCCACGCA AACGGTGATC
GGCACGGTGC CGGATATGGG CACCGATGAC ACGAGCGCTG CCATCAAGGC TGCCGAAAAG
GCCTTCAAGC TCTGGAAGAA AAAGACCCAT GCCGAGCGCG CCGGGCTGCT GGAAGCCTGG
TACGGCCTGA TGATCGAGCA TGTCGAGGAT CTGGCGCTGA TTCTGACAAT GGAACAGGGC
AAGCCGCTGG ATGAGGCGCG CGGCGAAATC CGCTACGGTG CCTCCTTTGT CAAATGGTTT
GCGGAAGAGG CCCGCCGCAT CGGTGGCCAT ACCATTCCCT CGCCAACCAC CGACCGCCGC
ATCGTTGTGC TGAAGGAGCC GGTTGGTGTC TGCGGCATCA TCACGCCCTG GAATTTCCCC
AATGCGATGA TTACCCGCAA AGTGGCCCCA GCCTTGGCGG CGGGCTGCAC CGTGGTCATC
AAGCCCTCGG ATTTCACGCC CTATTCGGCG CTAGCGCTGG GTGTGCTGGC TGAGCGCGCC
GGTATTCCGG CGGGTGTCAT CAATATCGTC ACCGGCATGC CGACCGAGAT TGGCAATGAA
ATCATGGCCA ATGACGTCGT GCGCAAGATT TCCTTCACCG GCTCGACCCG GGTCGGGTCG
CTGCTGATGC GCGGTGCCGC CGATACGATC AAGAAGCTCA GCCTGGAGCT TGGCGGCAAT
GCGCCGTTCA TCGTGTTCGA CGATGCCGAT CTTGATCTGG CGGTTGAAGG TGCGATCCTC
TGCAAATTCC GCAATGGCGG CCAGACCTGC GTTTGCGCCA ACCGCATCCT GGTTCAATCA
GGTGTCTACG ATGCCTTCGC GGCCAAGCTG ACGGCCCGGG TCAATGCCAT GAAGGTTGGC
CCCGGAACCG AGCAAGGCGT TTCCATCGGG CCGATGATCA ACGAAGCCGC GATTGGCAAG
ATTCGTCAGC ATGTCGAGGA TGCCGTTTCC AAGGGCGCGA AGATCGTCAC CGATGCCCAC
AGATTGCCGC AGGGTGCGCA GTTTACGGCA CCGGTGGTCT TGACCGGTGC GACAACCGAT
ATGCTGCTGG CCAGCGAGGA GACTTTCGGC CCGGTCGCGC CGCTGTTCAA GTTCGAAACC
GAGGAAGAAG CGCTGGAGAT TGCCAATGGC ACGCCCTTCG GTCTGGCTGC CTATTTCTAC
ACCGAAAGCC TGAAGCGCTC CTGGCGGGTG GCCGAGGCGC TGGAAGCAGG CATGATCGGC
CTGAATACCG GGGCGATTTC CACGGAAGTG GCACCTTTCG GTGGCGTCAA GCAATCCGGC
CTTGGGCGCG AAGGCGCGCA GATCGGCATC GAGGAATATC TGGAAATGAA GACCTTCCAT
ATCGGCGGTC TGGCCTGA
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| Protein sequence | MHNLKDKTLL RQQGLIGGEW VGAASNKVID VIDPATQTVI GTVPDMGTDD TSAAIKAAEK
AFKLWKKKTH AERAGLLEAW YGLMIEHVED LALILTMEQG KPLDEARGEI RYGASFVKWF
AEEARRIGGH TIPSPTTDRR IVVLKEPVGV CGIITPWNFP NAMITRKVAP ALAAGCTVVI
KPSDFTPYSA LALGVLAERA GIPAGVINIV TGMPTEIGNE IMANDVVRKI SFTGSTRVGS
LLMRGAADTI KKLSLELGGN APFIVFDDAD LDLAVEGAIL CKFRNGGQTC VCANRILVQS
GVYDAFAAKL TARVNAMKVG PGTEQGVSIG PMINEAAIGK IRQHVEDAVS KGAKIVTDAH
RLPQGAQFTA PVVLTGATTD MLLASEETFG PVAPLFKFET EEEALEIANG TPFGLAAYFY
TESLKRSWRV AEALEAGMIG LNTGAISTEV APFGGVKQSG LGREGAQIGI EEYLEMKTFH
IGGLA
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