| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5836 |
|---|
| Symbol | |
|---|
| ID | 7380620 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 857977 |
|---|
| End bp | 859155 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 643649370 |
|---|
| Product | ABC transporter substrate binding protein (spermidine/putrescine) |
|---|
| Protein accession | YP_002547607 |
|---|
| Protein GI | 222106816 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.174731 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAACGA CTTTGAAAAA TGGATTTTCG GTCAACCGAA GCAATATGCA ACGGCGCGAC
CTCTTGAAAT TTGCCGGTGC TGGCGGGTTG GCGCTGGCGG CCGGTCATCT GGGGCTTGGC
CGTTCGGCCT TTGCCGCAGA GGCGAAGTCT GTGGCTTTCT GGGGCACGGC GACGCTTGAT
ATCGGTGAAA AATGGGTGGA ATTTGCCACC CAAAATGGTG TAAAGCCTGA ATTTACCGAC
AATGGCAACG ACCTTGGTCC TGTCATTGCC CGTCTGGCCG CCGGCAATGC CAATGATTTG
TTCGACATTG GCGGTTTTCA GGGCGGTGCT GAAAAGGAAT TGGCCCGTCA AGGCGCGATT
ATCCCGTGGG ATGTCAGCAA GATCGCCAAT TACGACAGCA TCTGGCAATG GGCGCGCGAC
ATTCCCTACC TCAAGCACGA GGGCAAGCAA TACGGTATTC CGACCGTTGT GAATGCCGAC
TCGATCATCT ATCGCTCCGA TAAGCTTGGC AAGGTTGATA GTTATGGCGT GATCTTCGAC
CCGAAGATGA AGGGCAAGGT CGCCATGGAG GATGCCTGGA TCAACAGCGC GGTCTTCGCT
GCGATCTACC TCAAGGAAAG CGAAAACAAG CCGATCAAGG ACCCGGGCAA TCTCAGCGAA
TCCGAACTTG GTCTGGTGAT GGAATTCCTG ATCAAGCACA AGAAGGACGG ACAGTTCCGC
ACCTTCTGGA ATGGCTGGGA ACAGGGTGTC CAACTGGTTG CCAATGAAGA AGTTGACGCG
ATGACCGGCT GGGAGCCGAT TGTCTATGAA GGCCGCAAGC GCGGACTGAA AGTCGATTAT
GCCGCCCCCG TCGAGGGCTA TGAAGGCTGG GCCAACAATA CGGTTCTGCT CAAGGGTGCT
GGTGAACGCG GTGTGAGCGA TGCCGCGCAT CAATTCGTCA ATGGCCTTTT GGGCGGTCTC
TATGGCTGCG AGCTTGGCAA GGCGCGGGGC TATCTCGTCC CAACCGACAA CAACGTCGTC
TATGCCAAGG CACATCCTGA CGAATATAAG CCGGAAGAGG TGCAGGCGCG GGCTGACCAC
GTCAAAGCCA AGTTCGCCGG CAAGGTCTTC TGGCAGAATA CCCGGCCGGA CAATTTCCAA
CTCTATGAAG AATGGTGGCA GAAACTCCGC AATGCTTAA
|
|---|
| Protein sequence | MTTTLKNGFS VNRSNMQRRD LLKFAGAGGL ALAAGHLGLG RSAFAAEAKS VAFWGTATLD
IGEKWVEFAT QNGVKPEFTD NGNDLGPVIA RLAAGNANDL FDIGGFQGGA EKELARQGAI
IPWDVSKIAN YDSIWQWARD IPYLKHEGKQ YGIPTVVNAD SIIYRSDKLG KVDSYGVIFD
PKMKGKVAME DAWINSAVFA AIYLKESENK PIKDPGNLSE SELGLVMEFL IKHKKDGQFR
TFWNGWEQGV QLVANEEVDA MTGWEPIVYE GRKRGLKVDY AAPVEGYEGW ANNTVLLKGA
GERGVSDAAH QFVNGLLGGL YGCELGKARG YLVPTDNNVV YAKAHPDEYK PEEVQARADH
VKAKFAGKVF WQNTRPDNFQ LYEEWWQKLR NA
|
|---|
| |