| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5827 |
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| Symbol | |
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| ID | 7380612 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 847279 |
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| End bp | 848130 |
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| Gene Length | 852 bp |
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| Protein Length | 283 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643649362 |
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| Product | hypothetical protein |
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| Protein accession | YP_002547599 |
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| Protein GI | 222106808 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0647] Predicted sugar phosphatases of the HAD superfamily |
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| TIGRFAM ID | [TIGR01459] HAD-superfamily class IIA hydrolase, TIGR01459
[TIGR01460] Haloacid Dehalogenase Superfamily Class (subfamily) IIA |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.455102 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAAAC CTATCGATAC GCTCAATGAA ATCACCCAGG GTTATAATGT CATCCTGTCG
GATGTCTGGG GCGTTTTGCA TAATGGTATC GATGCCTTCC CGGCGGCGGC ACAAGCCCTG
TCGCAAGCCC GGGCCGATGG CGTTTCCGTC GTGCTCATTA CCAATGCCTC ACGGCCATCT
GACCGCGTCA AGACAATGCT TGATCAAATT GGCGTGCCGG AAACGGCCTA TGACGCTATC
GTTTCTTCCG GTGATGTGAC GCGAAAGCTG ATTGAAAAGG CCCCGCGCCG CGCTTTTCTG
ATCGGCCAGA GCCAGGATTT GTCGCTGTTT CATGGGCTCG ATGTTGAACT GGTTCCGGCA
GACGAGGCCG ACGCCATTAT TTGCACCGGA TTGTTCAATG ACGAAGAGGA GCAGCCGGAA
GACTATCGCG GGATGCTTGA AGGCTTGAAC CAGCGCGGAC TTCCGATGAT CGTCGCCAAT
CCCGACCTGA TTGTGGAACG TGGTCACAAG CTCGTCCCCT GCGCCGGCGC TCTGGCAGCG
ATATACGCTG AAATGGGCGG TGAAACCCGC TATGCCGGTA AGCCGCACAG CCCGATTTAT
GAAGCAGCTT TGGCGAAAGC GCAGGAAATA CGCGGCACTG AGATTGACCG CAGCCGCATC
ATCGCCATCG GCGACGGTAT GCCAACCGAT GTGAGGGGCG CGCTCAGCTT CGGCCTTGAC
CTCCTCTATG TGAGCGGCGG TATCCATGCT GCCGAATATA CCAATAACGG CAAGACAGAC
GAGACGATGC TGAACGCTTA CCTGGAGCGA GAGGCCGCGA CGCCAAAGTG GTGGATGCCC
CGCTTGGCCT GA
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| Protein sequence | MAKPIDTLNE ITQGYNVILS DVWGVLHNGI DAFPAAAQAL SQARADGVSV VLITNASRPS
DRVKTMLDQI GVPETAYDAI VSSGDVTRKL IEKAPRRAFL IGQSQDLSLF HGLDVELVPA
DEADAIICTG LFNDEEEQPE DYRGMLEGLN QRGLPMIVAN PDLIVERGHK LVPCAGALAA
IYAEMGGETR YAGKPHSPIY EAALAKAQEI RGTEIDRSRI IAIGDGMPTD VRGALSFGLD
LLYVSGGIHA AEYTNNGKTD ETMLNAYLER EAATPKWWMP RLA
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