| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5788 |
|---|
| Symbol | glcE |
|---|
| ID | 7380581 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 813427 |
|---|
| End bp | 814644 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643649331 |
|---|
| Product | glycolate oxidase subunit |
|---|
| Protein accession | YP_002547568 |
|---|
| Protein GI | 222106777 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGCGT TTTTGGCACC GCAAACGGAA GATGAGGCTG CGGCAATCAT CGCCGAGAGC
GCTACGACGG GCAGGGCGCT TGCCATCAAG GGTGGCGGTA CGCGCGCAGG CTTCGGCAAT
CGCCTTGAGA CCGATGCGAT ACTGTCATCC AGCGGGCTTT TCGGGATTGT TGCCTATAAT
CCGGCAGAAA TGGTGCTGAC GGCGAAAGCC GGGACGCCGA TGGCTGAGAT CGAGGCGGCG
GTGACTGAGA AAGGCCAGTC GCTGGCCTTT GAACCGCCGG ATCATCGCGG TTTGATGGGG
ACGACAGGGG AGCCGACGAT TGGCGGCGCC TTCAGCGTCA ATGCTTCCGG TCCTCGGCGC
TTTGTGGCAG GCGCGGCGCG CGATCACCTG CTGGGTGTTC GCTTCGTCAA TGGCAAAGGC
GAGGCGATCA AAGCAGGCGG GCGGGTGATG AAGAATGTCA CCGGGCTCGA TCTGGCGAAG
CTTCTGGCCG GTTCACACGG CACGCTTGGG TTTCTGACGG AAGTCACCTT CAAGGTTCTG
CCGCGTCCGC GCCTGACACA AACCGTTGTG GTGTCAGGTC TTGACGACGC GGCTGCCGCC
CATGCCATGG CCGTCGCGCT TGCCATGCCG GTCGAGGTGA CAGGCGCTGC CCATCTCCCG
GAACTTGTTC GACCCCGCCT GATCGGCGGA AATCTACCGG ATGGGCCAGC CACGGTATTG
CGGCTGGAAG GCCTGCCTGC CTCGGTGCGC GAGCGGACGG AAAAGCTTTT AGCGGTGATG
GAACGGCTTG GACCCGTCAC GCTGCTGGAT GAGCCGCAAA GTCTTGTTGT TTGGCGGGAA
ATCCGCGATG TACGCCCCTT CGCGGCCATG TTGGACAAGC CTGTCTGGAA AGTATCCGTC
GCACCGACCG CAGGCCATCA CCTGGTCGCT GGCCTACGCC TGCATGCGGC TATCGATGCC
TTTTACGACT GGCAGGGCGG TCTGGTCTGG ATGCAGATGG AGGCGGATAC CGATGCAGAC
CTTGTGCGTG CCGGCATCAA AGCCCTGGGC GGCGGCCATG CGACTTTGAT ACGCGCCAGC
GATACACAAA GGGTGTCGGT TGCTGCTTTT GAGCCGGAAG AGGCAGCCGT TGCATTGTTG
TCGCAGCGGT TGCGGGGAAA ATTCGACCCG TCGGGGATAT TTGATCCGGG ATTCACGGGC
GCAAGGTTGG CCAGTTAG
|
|---|
| Protein sequence | MSAFLAPQTE DEAAAIIAES ATTGRALAIK GGGTRAGFGN RLETDAILSS SGLFGIVAYN
PAEMVLTAKA GTPMAEIEAA VTEKGQSLAF EPPDHRGLMG TTGEPTIGGA FSVNASGPRR
FVAGAARDHL LGVRFVNGKG EAIKAGGRVM KNVTGLDLAK LLAGSHGTLG FLTEVTFKVL
PRPRLTQTVV VSGLDDAAAA HAMAVALAMP VEVTGAAHLP ELVRPRLIGG NLPDGPATVL
RLEGLPASVR ERTEKLLAVM ERLGPVTLLD EPQSLVVWRE IRDVRPFAAM LDKPVWKVSV
APTAGHHLVA GLRLHAAIDA FYDWQGGLVW MQMEADTDAD LVRAGIKALG GGHATLIRAS
DTQRVSVAAF EPEEAAVALL SQRLRGKFDP SGIFDPGFTG ARLAS
|
|---|
| |