| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5728 |
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| Symbol | |
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| ID | 7381610 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 750104 |
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| End bp | 751516 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643649282 |
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| Product | hypothetical protein |
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| Protein accession | YP_002547519 |
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| Protein GI | 222106728 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.44189 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGTCGT CAACGACGAA AATGGCAGCC GATCTCAACG ATCCGCGCAT CAAGCGGCTG
GTGATGACGG TTGCCCTGCC CGCCGTGGCA GGGCTGACAG CCAGCGCCGC CCACCACGCC
GTCAACGCCA TGTTCATCGG CGCATTGGGG CCGCAGGCGC TGGCAGGCGT CAGCCTCGTG
CTGCCGCTGT TCCTGCTGGT TAGCGCCGCA ACGGAAGGCT TGGGCATAGG CCTTGCCACG
CTTCTGGCGC GCTCACTCGG TCAGGGCGAT GTGAAGGCCG CATCCTCGGT TGCGGTGACG
GCCCTGGTTG CTGCCGTGCC GATGGGCATC GTGCTGTCCA CGCTCATTTA TCTCGCCTTG
CCAGCGTTCG TGCAGGCGGT GGGCGGTGAA GGTGATCTTC TCGCCTCGGG CCTGATCTAT
GGACGGTTGA TCGCCTTTGG CGTGACGCTC GGCATGTTGC AGGCGATCTG TGATTTTATT
GCCATTGCCG AGGGCAATTC ACGCTTCTCG ATGACGGTGT TGATTGCCAG CTTTGCCCTC
AACATCGCGC TTGATCCGGT GTTCATTTTC CTGCTCGATT TTCGGGAAGC GGGCGCGGCG
ATTGCCACCA TGGTATCGAC CGTTGCTGCG CTCCTAGCCT ATGCGGTTTA TTTCTACCGT
AGGAAGGGCA ATGTCAGAAT TGATCTGAGC CTGATCCGCT GGCGCCTGCT GAAACCGATC
TCCAGCATTG GCATCCCAGC CTGCGCCACC AGCATCGTCA CCGGCCTTGG CTTCATGGTG
TTGTTGCGCC AGGCAAGCCA AAGCGGCGGT GAAGCCGGCG TTGCCGCCAT TGCCATTGCC
ATCCGGCTGA TTGCCTTCGG GCAATTGCCG GTCTTCGGCT TCTGCCTTGG CGCGCAAAGC
GTCGTCAGCC ATGCCGTGGG GCTGGGTGAT GACCAGCGCA TCAAGGCTGC TATTCGCTTC
ATGCTGATGA TCACCATTCC CGTTGCTCTC TGCTATTCCA CGCTCTTGCT GGTCGCAGCA
GGTCCCATCG CCCGGCTGTT CACGCAAAGC CCTGAGGTTG CCGAGCAAAC CGCTGCCTGT
CTTCGTCTGC TGTTTCCGGT CTTTCCGCTG GCGGCCTTCC AATCGGTGCT CCTGGTCATG
CTGCAATCAC GCGGACGGGC TGGCCTGTCG GCCCTCGTCG GGCTGGCACC GAATGGTTAC
ATGCTGATCC CGCTTCTTTT GCTTTTGCCC GCCTGGCTCG GCTTTACCGG CGTTGCGATT
GCGCCTGCCA CTGCTGCGGT GCTGACCGCC GCTCTCGGCA TTGTCGTCGC CCGCCGCGAA
TGGGCGACCA TCCTCCCTTC CAACCTTCCT TCCAGCGACG GCCCACTCCC CGGCCTGTCC
GCACTCCATC CAGAGACAAG AGGTTTATCA TGA
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| Protein sequence | MTSSTTKMAA DLNDPRIKRL VMTVALPAVA GLTASAAHHA VNAMFIGALG PQALAGVSLV
LPLFLLVSAA TEGLGIGLAT LLARSLGQGD VKAASSVAVT ALVAAVPMGI VLSTLIYLAL
PAFVQAVGGE GDLLASGLIY GRLIAFGVTL GMLQAICDFI AIAEGNSRFS MTVLIASFAL
NIALDPVFIF LLDFREAGAA IATMVSTVAA LLAYAVYFYR RKGNVRIDLS LIRWRLLKPI
SSIGIPACAT SIVTGLGFMV LLRQASQSGG EAGVAAIAIA IRLIAFGQLP VFGFCLGAQS
VVSHAVGLGD DQRIKAAIRF MLMITIPVAL CYSTLLLVAA GPIARLFTQS PEVAEQTAAC
LRLLFPVFPL AAFQSVLLVM LQSRGRAGLS ALVGLAPNGY MLIPLLLLLP AWLGFTGVAI
APATAAVLTA ALGIVVARRE WATILPSNLP SSDGPLPGLS ALHPETRGLS
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