| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5726 |
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| Symbol | lysA |
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| ID | 7381608 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 747479 |
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| End bp | 748729 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649280 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_002547517 |
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| Protein GI | 222106726 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACGCC TTTCAAACGA CACACTCACC ACGCTTGCGC AAACCTATGG AACGCCGGTC
TGGGTCTATG ACGCAGACAC GATCCGCGCC CGTATCGCAC AATTGTCGTC CTTCGACGTC
ATTCGCTTTG CCCAAAAAGC CTGTTCAAAT ACCCATATCC TGCGGCAGAT GCGTGAGGCC
GGGGTGGTCG TCGATGCGGT GACGCTGGGT GAAATCGAGC GGGCCAGAAG AGCGGGTTAT
GTCACCGGCC AGGCCTCCGG TGTTGCCGAG ATCGTCTTTA CCGCCGATGT GTTTGATCGC
AGCACATTGG ACCGGGTGGT CGCTGACAAA ATCGAGGTCA ATGCCGGCTC CATCGATATG
CTGCACCAAC TTGGCGCACG CTCTCCGGGG CATCGGGTCT GGCTGCGCAT CAATCCCGGT
TTCGGCCACG GCCATAGCAA CAAGACCAAT ACCGGCGGCG AAAACAGCAA GCATGGCATC
TGGTTTGAGC AATTGCAGGA GGCTCTGGCA GCCGTGCGGC GCTACTCGCT GACGCTAGTC
GGCCTGCACA TGCATATCGG CTCCGGCGTC GATTACCGGC ATCTGCAACG GGTTTGCGGG
GCGATGGTAA CATTCTGCTG CGAGCTTGGT GCCGATATCG AGGCGATTTC GGCGGGCGGC
GGCCTCTCCA TCCCCTATAA GGATGGTGAG GAAGAAATCG ATACCGTCCA TTATTTCGCG
CTTTGGGATA GCGCCCGCAA ACAGATCGAG GAATATCTGC GCCACAAGAT CCGGCTCGAA
ATCGAGCCGG GCCGGTTTCT GACGGCGGAT TCGGGCGTTC TGCTGGCCGA GGTCCGCGCC
ACCAAAACCA TGGGCAGCAA TCATTTCATC CTTGTCGATG CCGGATTCAG CGATTTGGCC
CGCCCGGCGA TGTATGGCAG CTATCACGGC ATCTCCGTCT TGCCCGCCCC GAATAATAGC
GCACCGCATA GCGACGTGCC GGTGCCGACA GTGGTGGCAG GACCGCTTTG CGAATCCGGC
GATGTCTTCA CCCAGGGCGA ATTCGGGACG ATTGAAAAGC GCGACCTGCC GCAAGCGCAA
CCGGGCGACT ACATGGTATT TCACGACACC GGCGCCTATG GCGCCTCCAT GTCGTCAAAC
TATAATAGCA GGCTGTACGC ACCGGAAGTC CTGATCGAGG GGGACAACCA CCGGCTGATT
CGCAGGCGCC AGACGCTGGA TGACCTGCTG GCGCTTGAAA CAACGGCATA A
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| Protein sequence | MTRLSNDTLT TLAQTYGTPV WVYDADTIRA RIAQLSSFDV IRFAQKACSN THILRQMREA
GVVVDAVTLG EIERARRAGY VTGQASGVAE IVFTADVFDR STLDRVVADK IEVNAGSIDM
LHQLGARSPG HRVWLRINPG FGHGHSNKTN TGGENSKHGI WFEQLQEALA AVRRYSLTLV
GLHMHIGSGV DYRHLQRVCG AMVTFCCELG ADIEAISAGG GLSIPYKDGE EEIDTVHYFA
LWDSARKQIE EYLRHKIRLE IEPGRFLTAD SGVLLAEVRA TKTMGSNHFI LVDAGFSDLA
RPAMYGSYHG ISVLPAPNNS APHSDVPVPT VVAGPLCESG DVFTQGEFGT IEKRDLPQAQ
PGDYMVFHDT GAYGASMSSN YNSRLYAPEV LIEGDNHRLI RRRQTLDDLL ALETTA
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