| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5720 |
|---|
| Symbol | |
|---|
| ID | 7381603 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 742158 |
|---|
| End bp | 743030 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643649275 |
|---|
| Product | oxidoredutase |
|---|
| Protein accession | YP_002547512 |
|---|
| Protein GI | 222106721 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2084] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.132132 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGGA TCGCCTTTCT CGGCACCGGA TTGATGGGGG AGCCGATGGC CCGTCATCTG
GCTGCGGATT TCGAGGTCGT GGTCTGGAAT CGCTCCCCAC AAAAGGCGCA GGCCTTGTCC
GATGTGGCCC GCGTTGCCGC CAGCCCGGCA GACGCAGCCA GGGGTGCGGA TGTGGTGATT
TCCATGCTGC TCGATGGTCC GGCCACCCGC GCCACACTGG AAGACAGCGG CGCAATGGCT
GCGGCAGGCG AAGGCGCGCT GATCATCGAC ATGGGATCGG TGGAGCCGGC CTGCGACCGC
GATCTCGCGT CTTTGGCCCG GCAAATGGGC AAACGATTCC TCGATGCCCC CGTCTCCGGC
GGTGTGGCTG GGGCCAAGGC AAAGTCGCTG TCGATTTTCG TCGGCGGCGC GCCGGAGGAT
TTCGCAGCCG CCGTGCCGAT TCTCGAAAAA CTTGGCCGTC CAACACTGAT GGGGCCGGTC
GGCACCGGCC AGACGGCGAA ACTTGCCAAT CAGTTGATCG TCGCCGTCAC CATCGGCGCG
GTCGCTGAAG CCTTTCGGCT GGCACAATCG GCAGGATGCG ATCCGGCAAC GCTGCGCGAC
GCTTTACGGG GTGGCTTTGC CGATAGCCGG ATTCTGGACC TGCATGGTGA GCGGATGGTG
ACCGGCAACT TCACGCCGGG TGGACGATCC GCTGCGCAGT TGAAAGACTT AAATAATGCG
CTTTCGGTCG CCGCCGAACA CGATTTGACG CTGCCGCTAT CGGAAACGGT GCGGGCGGGC
TTCACCGACC TGGTGCAGAA CAAAGGCGGC GCAGATCTCG ACCACTCGGC CTATTATCTC
TGGCTGCAAC AGATTCAGCC CGTAAAGGAT TGA
|
|---|
| Protein sequence | MTRIAFLGTG LMGEPMARHL AADFEVVVWN RSPQKAQALS DVARVAASPA DAARGADVVI
SMLLDGPATR ATLEDSGAMA AAGEGALIID MGSVEPACDR DLASLARQMG KRFLDAPVSG
GVAGAKAKSL SIFVGGAPED FAAAVPILEK LGRPTLMGPV GTGQTAKLAN QLIVAVTIGA
VAEAFRLAQS AGCDPATLRD ALRGGFADSR ILDLHGERMV TGNFTPGGRS AAQLKDLNNA
LSVAAEHDLT LPLSETVRAG FTDLVQNKGG ADLDHSAYYL WLQQIQPVKD
|
|---|
| |