| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5716 |
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| Symbol | |
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| ID | 7381600 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 738115 |
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| End bp | 739014 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643649272 |
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| Product | transcriptional regulator LysR family |
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| Protein accession | YP_002547509 |
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| Protein GI | 222106718 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0340323 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAGTC CCCGCCGTTT CCTGCCATCC CTGCATCTTC TTTCGGCTTT TGAGGCCGCG
GCCCGCACCG GCAGCGTCAC GGCGGCAGCG CGGGAATTGA GCCTGACGCA AAGCGCGGTC
AGCCGGCAGA TCAAGGCGCT GGAGGAACAG CTCGGCGTCG AGTTGTTTCA CCGTGAACGC
CAGACGATCC GGCTGACGGC AGGCGGCAAT ATCTATGCCC GCGAAATCCG CGATGCGCTG
CGGATTATCA GCACCGCATC GCTAACGCTG AAGGCCAATC CGTTCGGAGG GACGCTCAAT
CTCGCCATCC TGCCCACCTT CGGCACTCGA TGGCTGGCCC CGCGCCTGCC GGGATTTCTC
AGCCGCCACC CCGGCATCAC CATCAATCTC GTCACCAAGC TTTCCTATTT CGATTTCCGG
CTGGAACCGG TCGATGCTGC CATTCACTTC GGTCTGGCCG ATTGGCAGGG CGCGGAAATG
TCGCTGCTGC GCTCTGAAAC CGTCATTCCC GCCTGTAGCC CTGAGTTGCG CGACACCTAC
CGGTTTCAGA CACCGCTGGA TCTGCGCCAG GCCCCTCTTC TTCATCTCAC CACCCGCCCC
GATGCCTGGG AACGCTGGCT TGCCAGCAAT GACGTGCAAT CCGACCAGGT GCGCGGCATG
TTGTTCGACC AGTTTGCGAC AGCCGCTCAA GCCGCGATGG CAGGACTTGG CGTCGCGCTG
CTGCCTGAAT TCCTGATCGA AGAGGAAATG GCCTCCGGTC GCCTGGTCAA GGCCATCGAC
CGGCCGATGC AAAGCACGGA GGCCTATTAT CTCGTCTGGC CGAATGAACG TGGTTCACAC
CCACCTTTGC AGGCGTTTCG AGACTGGATA TTGGAAGAAA CCGCGGCCGA CAGACGCTAG
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| Protein sequence | MQSPRRFLPS LHLLSAFEAA ARTGSVTAAA RELSLTQSAV SRQIKALEEQ LGVELFHRER
QTIRLTAGGN IYAREIRDAL RIISTASLTL KANPFGGTLN LAILPTFGTR WLAPRLPGFL
SRHPGITINL VTKLSYFDFR LEPVDAAIHF GLADWQGAEM SLLRSETVIP ACSPELRDTY
RFQTPLDLRQ APLLHLTTRP DAWERWLASN DVQSDQVRGM LFDQFATAAQ AAMAGLGVAL
LPEFLIEEEM ASGRLVKAID RPMQSTEAYY LVWPNERGSH PPLQAFRDWI LEETAADRR
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