| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5700 |
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| Symbol | |
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| ID | 7381588 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 724690 |
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| End bp | 726606 |
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| Gene Length | 1917 bp |
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| Protein Length | 638 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643649260 |
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| Product | ABC transporter substrate binding protein (oligopeptide) |
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| Protein accession | YP_002547497 |
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| Protein GI | 222106706 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0714934 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGACCA GAAAACTGCT TGCCACAGTG GCGCTTGCCG CACTGGTGGG CATGCCGGTC
ATGGCGATTG CCCAGGACTA TCATCAGGCG CCGCAGCTTG ATGCGCTGGT CAAGGAAGGC
AAATTGCCGC CGGTCGAAAA ACGTCTGCCG GAAAATCCGC GCGTCGAGGA CATGGTGGAC
CGGGTCGGCG TCTATGGTGG TTACCAGACC GGCGGATTGG TGGGCGGCAA TGACCGCAAC
GCGCTCGCTA AACTGACCGG CTACGAGCCG CTGATGGCTT GGGACCGTGA ATGGTCCGGC
AAGATCATTC CCAACGTCGC CACCTCCTAC AAAGCCAGCG ATGACGCCAC GACCTTCACC
TTCGAATTGC GCAAGGGCAT GAAATGGTCG AACGGCATGG ATTTCACCGC TGAAGACATC
GCCTTCATGG TCAATGACGT ACTTCCCGAC GACAAGCTGT TTCCGGCCAA ACCCGCCTGG
ATGCTGGTAG GCGGCAAGCT GCCGGTAGCG ACCGTCAACA GCCCGACCAG CGTCACCATC
AAATTCTCCG GCCCGAACGG CCTGTTCATC ATGAATGTCG CGGGCGTTTT CGGCACGCAG
TTGACGCTGA TGTCGAAGCA ATATTGCAGC CAGTTCATGC CGAAATTCAA TCCCGATGCC
GAAAAGCTGG CGAAGGATGC CGGGGATGCT GGCTGGGTCG AGCATTTGAC CAATAAATGC
GGGCTGGAAA TCGAGCAGGC GCAGCGCTGG CGCAATCCTG ATATGCCCGT GCTCGGCCCC
TGGAAGATCA AGGACCCCTA TGTGTCCGGC GCCACGCAGG TGACGTTTGA GCGCAATCCC
TATTACTGGA AGGTCGATCC GTCGGGCAAC CAGCTGCCTT ATCTCGATGG CGCCCGCTAT
AGCGTCAATT CGGATGTGCA GACCGTGCTT CTGGCGGCGA TTGCCGGCAA GATCAACTAT
CAGGAACGCC ATATCGGCGT GAACCAGAAC CGTCCGGTCT TGAACGACGG CGCGGATAAG
GGTGGTTACG AGTTGATCGA CCGGATTACC GGTCAGGGTG CGGATACGTC CTTTGCCTTC
AATATGACCC ACAAGGACCC GGAGATGCGC AAGATCTTCG GCAACAAGGA CTTCCGGGTG
GCGATGAGCA TCGCCATTGA TCGCAAATCG GTCATCGATG CGATTTATCT GGGTCTGACG
CAGCCGAAAC AGGTGGCGCC AAACGAAAAC ACGCTCTACG CCAATGACCG GCTGGCGCAT
CAATATCTCG ATTACGACCC TGACAAGGCC AACAAGCTGC TCGACAGCAT TGGCCTCGAC
AAGAAGGATG CCGATGGCTT CCGGCTTCGT CCTGACGGCA AGCGCCTGAC CTTTACCGTC
ATCACGCCTG CGGCGCTGTC CAACTGGGGC GATGTTGCCG AACTGGTCAT TCGCTACTGG
CAGGCTGTTG GTGTCGATGC GCGCTTCCAA TCGATGGACC GCACGCGGTT TTACGAGGTC
AAGAACAACA ATGACCATGA CGTGGCACTG TGGACCGGCG AAGGATATGG CGTCGATGCC
CTGCTTGATC CGCGCCTCTA TATGCCGGTC TCGATTGAAT CCAACTATGC GGTCGCCTGG
GGCAAGGCTT ATCTGAAGAT GCAAGGCGGA GAAGAGCCGC CGGAGCCGGT CAAGAAACAG
TGGGATCTGT ATAACCAGAT CAAGGGCACC ACCGATCAGA CCAAGCAGAC GGCGCTGTTC
CAGCAGATTC TCGATATTGC CGCCGACCAG TTCTACACGA TTGCGATTTC GACACCGCCG
GCGGGCTTCG CCGTCAAGGC CAAGAACCTG CACAACGTGA TGAACAATGC ACCGACCTCC
TGGGTCTACC CAAGCCCGGC ACCCAGCAAT ACCGAGCAAT GGTTCATCCA AAACTAG
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| Protein sequence | MKTRKLLATV ALAALVGMPV MAIAQDYHQA PQLDALVKEG KLPPVEKRLP ENPRVEDMVD
RVGVYGGYQT GGLVGGNDRN ALAKLTGYEP LMAWDREWSG KIIPNVATSY KASDDATTFT
FELRKGMKWS NGMDFTAEDI AFMVNDVLPD DKLFPAKPAW MLVGGKLPVA TVNSPTSVTI
KFSGPNGLFI MNVAGVFGTQ LTLMSKQYCS QFMPKFNPDA EKLAKDAGDA GWVEHLTNKC
GLEIEQAQRW RNPDMPVLGP WKIKDPYVSG ATQVTFERNP YYWKVDPSGN QLPYLDGARY
SVNSDVQTVL LAAIAGKINY QERHIGVNQN RPVLNDGADK GGYELIDRIT GQGADTSFAF
NMTHKDPEMR KIFGNKDFRV AMSIAIDRKS VIDAIYLGLT QPKQVAPNEN TLYANDRLAH
QYLDYDPDKA NKLLDSIGLD KKDADGFRLR PDGKRLTFTV ITPAALSNWG DVAELVIRYW
QAVGVDARFQ SMDRTRFYEV KNNNDHDVAL WTGEGYGVDA LLDPRLYMPV SIESNYAVAW
GKAYLKMQGG EEPPEPVKKQ WDLYNQIKGT TDQTKQTALF QQILDIAADQ FYTIAISTPP
AGFAVKAKNL HNVMNNAPTS WVYPSPAPSN TEQWFIQN
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