| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5678 |
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| Symbol | |
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| ID | 7381568 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 699866 |
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| End bp | 701026 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643649240 |
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| Product | RND multidrug efflux membrane permease |
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| Protein accession | YP_002547477 |
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| Protein GI | 222106686 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.116092 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAAAA CAAAGCGATT TCTTGTTGCG GGTTGCGCTA TTGCAGCCCT TTCCTTTTCC
ACCCCATCAT TTGCGCAGAT GCCAAATGCT GGACCGCCGG CCGTCGGCGT CACGATTGCC
AAGCTGAAGC CGATCAATGA CACGACCGAG GTCAATGGCC GGGTCGAGGC GAAGGATTCC
GTCAATCTCG TCGCCCGTGT GACCGGATTC CTGGAAGAAC AACTTTTCAA GGAAGGTTCC
GAGGTCAAGA AGGGCCAGGT CCTGTTCCGC ATCGAGCGGC AGTCCTATGA GGCTGATCTG
GATTCCAAGA AGGCCACTCT TGCCGAGAAC CAGGCCACCC TTGAAAATTC GAATATATCC
CTTGCTCGTA ATGAACAACT TCGAGCCGGG GGCAGCGGCA GCCAGAGCAA TCTGGACGAC
GCACGCGCCA CCCAGCGGAC CTCGATTGCC AAGGTCGCGG AATCCGAAGC GGATGTGCGC
ACCTCGCAGA TCAATCTCGG CTATACCGAT ATCATCGCGC CTATCGATGG TCGTATCGGC
CTTGCTTCTG TCACGGTCGG CAATGTCGTG TCGTCTTCAT CGGGAACCTT GGCCACAGTG
GTCAGTCAGG ACCCGATGTA TGTGAAATTC CCGATATCGG TGCGCCGTCT CATTGAATTG
AGACAGCGGT TCGACAAGGA AGGCGGTCTG GAAAAGAGCG TGAAGCTCAA GATCCGCTTG
CCCGATGGCA GACTATACGC TCAGGAAGGC ACGCTTGATT TCTACGACAT CAGCGTTTCC
GAGAATACTG ATTCCATCAC CCTGCGTGGC ACGATCCCCA ATCCGCTGCT GCCAACGGGA
CATCGGGAAC TGGTGAATGA CGAATTCGTC CGCGTGATCC TCGAAACCGT CGAGCCAACC
AACTACCTCA CCATTCCGCG CGCCTCGGTC ATGATCGACC AGCAGGGCTC CTACGTCTAT
GTGGTTGATG ACAAGAGCGT TGCGCAGGTG CGCCGTGTGA CGCTTGGGCA ATCCACGCCT
GACATGGCTG TTGTCACCAA TGGCCTCAAG GAAGGCGACA AGGTGATTAC CGACGGCATC
CAGCGTGTTC GGCCCAATAC ACCGGTTAAT GCACAGCCGG CCGACCAGGC TCCTTCACCC
GCCGCACCAA AGCAGGGCTA A
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| Protein sequence | MQKTKRFLVA GCAIAALSFS TPSFAQMPNA GPPAVGVTIA KLKPINDTTE VNGRVEAKDS
VNLVARVTGF LEEQLFKEGS EVKKGQVLFR IERQSYEADL DSKKATLAEN QATLENSNIS
LARNEQLRAG GSGSQSNLDD ARATQRTSIA KVAESEADVR TSQINLGYTD IIAPIDGRIG
LASVTVGNVV SSSSGTLATV VSQDPMYVKF PISVRRLIEL RQRFDKEGGL EKSVKLKIRL
PDGRLYAQEG TLDFYDISVS ENTDSITLRG TIPNPLLPTG HRELVNDEFV RVILETVEPT
NYLTIPRASV MIDQQGSYVY VVDDKSVAQV RRVTLGQSTP DMAVVTNGLK EGDKVITDGI
QRVRPNTPVN AQPADQAPSP AAPKQG
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