Gene Avi_5677 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5677 
Symbol 
ID7381145 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand- 
Start bp699084 
End bp699689 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content60% 
IMG OID643649239 
Productregulatory protein 
Protein accessionYP_002547476 
Protein GI222106685 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.106455 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGCTCC TGAACGCTGC CGAGCAACTT TTCCTCACCA AGGGCTTTGA CCAGACGTCA 
TTGGACGAAA TTGCCCAGGC GGTTGGCGTG ACGCGCGGTG CTGTCCATTG GCACTTCAAG 
AACAAGCGCG GCATTCTCGA AGCCCTGCGC AACCAGGCTT TCAAGCCTTT CGAGCACTTG 
GCGGCTCGGC TTCCGGCGGA CAGTTCCGTC GACGTGTTTG CCGCCCTTGA ACAGATATTG 
TTCGACATGC TGGCGCATCT TCAGGCCGAC GAGCGGCGGC GCGGTGTGAT CCGGGTCAGC 
CTCCATCTGG ACCTTTCGAT AAAGGAAACC GACTCGGATG GCATTCTGAG CACGCTCAAG 
GGCAAGCTGC TGCCCCTCTT CCAGGTTGCC GCCGACAGGG GCCAGTTGAC TGCGCCCTGG 
AACCCGGCCT CCGCAGCCAT GACCCTGAGC GCGACCATAT CGGGCCTGAT CGGCGAATGG 
GCCTTCGGCA GGGATAATTT CCAGCTCGTA CCGTATGCAC AGCAATTCGT CCGGATTGCT 
CTGGTGGGGT TCGGCATGCA AAGCCAGGAC TGTTCTACAT TCCATAAACA GCCTGGGAAG 
GCCTGA
 
Protein sequence
MQLLNAAEQL FLTKGFDQTS LDEIAQAVGV TRGAVHWHFK NKRGILEALR NQAFKPFEHL 
AARLPADSSV DVFAALEQIL FDMLAHLQAD ERRRGVIRVS LHLDLSIKET DSDGILSTLK 
GKLLPLFQVA ADRGQLTAPW NPASAAMTLS ATISGLIGEW AFGRDNFQLV PYAQQFVRIA 
LVGFGMQSQD CSTFHKQPGK A