| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5639 |
|---|
| Symbol | |
|---|
| ID | 7381113 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 663622 |
|---|
| End bp | 664854 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643649207 |
|---|
| Product | ABC transporter substrate binding protein |
|---|
| Protein accession | YP_002547444 |
|---|
| Protein GI | 222106653 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.137599 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGATT TTGACTGTCA GAGAAAATCG CATGACCAGA GAGACTGCAT GACAAGGATG
ACCGTTCCGA TTTCGATCCT GTTCTCGACC ACCGGGCCTT ATGCGGCACT TGGCCGGGAA
GCCGTCGACG GGGCGATGGC GGCCATTGCG CAGATCAATA CGGATGCGGC ATTTGCTGTT
CAAATCGAGG CGAAACTGGC TGATCCCGGT GGTAATGCCG AGCGCTATGG ACTGATGGCG
GAAGCGGCTA CCCGCGACGA TGGCTGTAAA CATATCATCG GCGCCATCAC CTCCTGGAGC
AGAAAAGAAA TCCTGCCGGT GGTCGAACGG TCAGGCGCGC TGCTCTGGTA TGCCTTTCCG
TATGAAGGCT ACGAGGCCAG CGACAGCGCG CTTTATCTCG GTGCCTGTCC CAACCAGCAC
CTTCTGCCGC TGTTTGCACA TGTGTTGCCA CGGTTCGGAC GGCGGCCTTT CATTGTCGGG
TCCAATTATA TCTGGGGCTG GGAAGTCAGC CGGATCGCCC GGGAACTTAC CGAGGCCAGC
GGTGGCCAGG TGGTCGCCGA CCGGTATATG CCGCTCGGCT CCACCCAGGT CGATCACCTG
ATTGCCGAGA TCCGTCAAAA GCGGCCCGAT TTCATCCTGA GCAATCTCGT CGGCCAATCG
GCAGCCGCCT TTCTGGCCGC CTATGACGCC CTGCGGCGCG AAGATCCTGA TTTTGGCCCG
GAGAACTGTC CCGTCACAGC CTGCAATCTC TGCGAAACAG ATCTCGCCGT TCTGGAGCCA
TCCGCCCGGA TCGGCCATAT CACCACCTCT GTCTACTTTC AGGGATTGGA AACCGAGGAA
AACCAGGCGT TCAAGGCAGG AATCGCACGG CGTCACGGTC AGGACCGCCG CCTGACCACG
CCTTTCGTTT CTGCCTATAC CGCTGTCATG GTTCTGGCGC AGGCGATGGC CGATGTGGGC
AGCGACATGC CGGAGGCCGT GCGCCATGCC GCCACGAACC GGCTGTTTCG CACCCCGCTT
GGGCCATTGA AAATCGACCC CCGCACCCAG CACGCCGCGC TTCGTCCGCA TATCGCGCTT
TCGGACCACG ATGGTTCCTT CACGCTGTTT CAAAGTGCGG CGGTGCCCAT TGAGGCTGAT
CCCTATCTGG TGCGCAGCCA GCCAAAGCGA ATGGAAGACA CTCCACCCGC GCCTAAACCC
CAGACGTCAC CATCCCTGAA GGTGATCAAA TGA
|
|---|
| Protein sequence | MRDFDCQRKS HDQRDCMTRM TVPISILFST TGPYAALGRE AVDGAMAAIA QINTDAAFAV
QIEAKLADPG GNAERYGLMA EAATRDDGCK HIIGAITSWS RKEILPVVER SGALLWYAFP
YEGYEASDSA LYLGACPNQH LLPLFAHVLP RFGRRPFIVG SNYIWGWEVS RIARELTEAS
GGQVVADRYM PLGSTQVDHL IAEIRQKRPD FILSNLVGQS AAAFLAAYDA LRREDPDFGP
ENCPVTACNL CETDLAVLEP SARIGHITTS VYFQGLETEE NQAFKAGIAR RHGQDRRLTT
PFVSAYTAVM VLAQAMADVG SDMPEAVRHA ATNRLFRTPL GPLKIDPRTQ HAALRPHIAL
SDHDGSFTLF QSAAVPIEAD PYLVRSQPKR MEDTPPAPKP QTSPSLKVIK
|
|---|
| |