| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5632 |
|---|
| Symbol | |
|---|
| ID | 7381108 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 658220 |
|---|
| End bp | 659191 |
|---|
| Gene Length | 972 bp |
|---|
| Protein Length | 323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643649202 |
|---|
| Product | ABC transporter membrane spanning protein (oligopeptide) |
|---|
| Protein accession | YP_002547439 |
|---|
| Protein GI | 222106648 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.18926 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCTATG CCCTCATTCA ACGTTTCGCC CAGATGATCT TCGTGCTGTT CGGCATTTCG
GCGCTGGTCT TCCTGATCTT TTTCGCCACG CCGGGCGCTG ATCCTGCCGC CCGCATTGCC
GGACGCAATG CCTCGCCGGA AACCATCCAG GCAATCCGCA AGGAATTCGG CTTCGACCGG
CCACTGCCGG TGCAATACGG CATCATGATG AAACGGCTGT TCATCACCCA GGATCTCGCC
TCCTTCGTCA ATCGGGGCAT GAAGGTGGTG CCGCAAGTGA CGGCGGCTGC CCCCGTCACC
CTGTCGCTGG TCTTCGGTGC CGCCGTGCTC TGGGTGATCG GCGGGATCGC GGTCGGGGTC
GTGGCCGCCA TGGCCCGCGA TACGGCGTTA GACCGCGGAC TGATGGTGCT GGCACTGATC
GGCGTTTCCA TGCCAGTCTA CTGGCTGGGC GAGGTGATGA ACCTGATCTC CCAGAACCGC
TTCCACGACA CGATCTTCTT CTCCTGGGTG CCATCGCTTG GCTACAAGCC GTTATTCACC
GACCCCGCCG GCTGGTTCAA GACGCTGATC ATCCCGTGGT GTACATTGGC CGCACTTTAT
ATCGGCATCT ATGGCCGGGT GCTGCGGGCA ACGCTGGTCG AATCCTATCA GGAGGATTTC
ATCCGCACCG CCCGCGCCAA GGGTCTCAGC CCATCGCGGG TCATGCTGCA CCATGCGCTG
CGCACCTCGC TCATTCCGTT CGTCACCATG TTCGGGCTGG ATTTCGGCGC ATTGGTCGGC
GGCTCGGCGC TGCTGACGGA AGTGGTGTTC GGGTTGAACG GCGTCGGACG CCTGACCTAT
CAGGCCCTGC TCAATCTCGA CCTGCCGATG ATCCTCGGCA CTGTCATCTA CGCCTCCTTC
TTCGTCGTCA TCGCCAATGC ACTGGTTGAC GTCGTCTATG TGCTGATCGA TCCGCGCGTG
CGGGGAAGCT GA
|
|---|
| Protein sequence | MIYALIQRFA QMIFVLFGIS ALVFLIFFAT PGADPAARIA GRNASPETIQ AIRKEFGFDR
PLPVQYGIMM KRLFITQDLA SFVNRGMKVV PQVTAAAPVT LSLVFGAAVL WVIGGIAVGV
VAAMARDTAL DRGLMVLALI GVSMPVYWLG EVMNLISQNR FHDTIFFSWV PSLGYKPLFT
DPAGWFKTLI IPWCTLAALY IGIYGRVLRA TLVESYQEDF IRTARAKGLS PSRVMLHHAL
RTSLIPFVTM FGLDFGALVG GSALLTEVVF GLNGVGRLTY QALLNLDLPM ILGTVIYASF
FVVIANALVD VVYVLIDPRV RGS
|
|---|
| |