Gene Avi_5589 details

Gene Information

• Locus tag: Avi_5589
• ID: 7381071
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 600415
• End bp: 602313
• Gene Length: 1899 bp
• Protein Length: 632 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643649165
• Product: sensor histidine kinase
• Protein accession: YP_002547402
• Protein GI: 222106611
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG3920] Signal transduction histidine kinase

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTTGGCG CAGTCGTGTC TTGGAGGGGC GACGGTTGTG CAGTTTCGCC AGGCCTTTGT 
GCATACGGGT CTTGGTGCGA AACAGGGGCC GAAAAGCGTC TTGATCTCTT GCGGGTGGGG 
AGGGGTGGCG TGAAAAAGAG ACTGGTCGCT GTGGTCTTGA CGGCGTTGTC ACCGGCATTG 
GGAATGCTGG TTTACAATGA AGTGAGTGCG CGTGCCGAAC GCTATGCCGA AGTTCATCGT 
CAGGTGTTCG AAACTGCCCG ACAGGCGGCG TCCGAGGTGA AAAGCGTCGT GGAAGGCGTC 
AAGGCCCTGC TGATTGCCAC CGCGGTTATT CCAGCGGTCG CCGGTCAGGA TAAACAGGCC 
TGTACCGACG TTCTGAAATC GGTAGCCGCC AGAGTAACGC AGGTCCGCAA TATCGTTGTT 
CTCGATCGCA ATGGAAAACT GGTTTGCGAC AATATGGGCT GGGAGGTCGG CAGCGACTTC 
AGCGATCGCG ACTATGTTCG GCAAGCTCTT CGGTCCGATG CGTTATCGGT TGGCGATTAC 
ACGGTCAGCC GGATCTCGAA CGCACCAATC GTGCCAATGG CGCTGGCCAT CAAGCAGGGA 
TCCGAGACAG TTGGTGTGCT GGCGACGGCG GTGCATCTTG AGTGGCTGGA ACAGCGCATC 
GTTCAGCGGG GCCTTCCGCC GGGCGGTTGG ATCACCATTG CTGACCGCAA CGGTATCGTG 
CTTGCCCGCA ACCCGGGGCC TGAAAAATTC GTTGGCACCC AGATTCCACC GCCCTATCAC 
ACGCTGGTTC AAGCCCAACA ACCCGGCACG ACGGAACGTG TAGGTCAGGA CGGAATACGC 
CGGATTATGG GTTATGTTCC TGTTTCACCC GACAATCCAT TTTATGTCAG CGCCGGATTT 
TCGGCGGACC AGGCATTTGC GCCGATTGAC CGAGCTTCTC TCTTGGGATT GGCGATGATC 
GCTGTGGGCG CAGGTCTCGC TCTCCTGGCG GCGTTTTTGA TCGGAAATCG CTTCATCCTC 
GGCCCGATCA CTCACATCGT TGCCGTTCTT CAGCGATGGC GCCAAGGGGA TCTCGCGGCC 
AGAACCGGGA TGACCGGGCG CTCCAGTGAA TTGGGACAGG TTGGCGCCAC GGTCGATAGT 
CTTCTGGACG AATTGGAAGC ACGCCGATGT GAGGCAGCGC GCGCTGAAGA AAACCGCAAA 
CTTGTGGCCA GAGAGCTGGC GCACCGTGTC AAGAATACGA TGGCGATGAT CCAGGCGATC 
GCAAGGCAGA CGTTCAAGGA CCGCTCGCAG GAAAATGGCG TTTTTGCCCG GCGCGTTGCA 
GCCCTTGCGG GAGCCTATGA TATCCTTTTG TCGGAAGACT GGAAAAGTGC CGGGTTGCGC 
GATGTCCTCG AGCGGGCGCT TCAACCCTTC GATAGCGAGG GTGACAGGCG GATTGTTCTC 
CAGGGGGCAG CCTGCACCTT GCCGCCTGAG GCTGCTGTCG CGCTATCGCT GATCGCGCAT 
GAACTGGCCA CAAATGCCGT GAAATACGGG TCTCTTCGCG AACGGGATGG ACGTGTCAAG 
GTAGAATGGC GGCAAGAGCA GGATCGGATC GAGCTGCAAT GGCGGGAAGA AGACGGGCCG 
CCGGTCGTTG ATCCCACTCT TCAAGGTTCT GATCCCCAAG CCTCCGGTCT TAAAGGGGCC 
AGTGTCGAAG GGTTTGGGTC GCGGTTGATC CGCAGTGCTT TCCCTCGCAG CCTGTCTCCC 
AAGATCAGCA GCGATTTCCG GCCCGATGGT CTTCGTTTCC ATCTTTCCTT CGCTGTGGTC 
CAGCCAGGGT TAGGGCAGTC GTCGGTGTCA GGGCAGTCCG AGACAGCGCA ATCCGGTGCT 
TTGGATAAGC CGCAAACACT CGCCGCCTTG GAGGCTTGA 

 

Protein sequence

MLGAVVSWRG DGCAVSPGLC AYGSWCETGA EKRLDLLRVG RGGVKKRLVA VVLTALSPAL 
GMLVYNEVSA RAERYAEVHR QVFETARQAA SEVKSVVEGV KALLIATAVI PAVAGQDKQA 
CTDVLKSVAA RVTQVRNIVV LDRNGKLVCD NMGWEVGSDF SDRDYVRQAL RSDALSVGDY 
TVSRISNAPI VPMALAIKQG SETVGVLATA VHLEWLEQRI VQRGLPPGGW ITIADRNGIV 
LARNPGPEKF VGTQIPPPYH TLVQAQQPGT TERVGQDGIR RIMGYVPVSP DNPFYVSAGF 
SADQAFAPID RASLLGLAMI AVGAGLALLA AFLIGNRFIL GPITHIVAVL QRWRQGDLAA 
RTGMTGRSSE LGQVGATVDS LLDELEARRC EAARAEENRK LVARELAHRV KNTMAMIQAI 
ARQTFKDRSQ ENGVFARRVA ALAGAYDILL SEDWKSAGLR DVLERALQPF DSEGDRRIVL 
QGAACTLPPE AAVALSLIAH ELATNAVKYG SLRERDGRVK VEWRQEQDRI ELQWREEDGP 
PVVDPTLQGS DPQASGLKGA SVEGFGSRLI RSAFPRSLSP KISSDFRPDG LRFHLSFAVV 
QPGLGQSSVS GQSETAQSGA LDKPQTLAAL EA