| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5553 |
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| Symbol | |
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| ID | 7381461 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 551142 |
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| End bp | 552212 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643649133 |
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| Product | transcriptional regulator LacI family |
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| Protein accession | YP_002547370 |
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| Protein GI | 222106579 |
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| COG category | [K] Transcription |
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| COG ID | [COG1609] Transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.539573 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAACAGC CGCCGATCAG GAAATCATCC GTCACCGTTG CCGACGTGGC CAGAGCCGCA
GGCGTTTCCA AGGCGACGGC TGCGCGCGTT TTGGGCGGCT ATGGCACCGT CAGCGACAAG
GTGCGGACGC TGGTTCTGGA GGCTGCGGCC ACATTGGACT ACCGGCCCAA TGAGCTGGCC
CGTAGCATGA CAACGGGTCG CTCCGGCACC ATTGGTGTTG TGGTTGGGGA TATTGAAAAT
CCGTTTTTCA GCTCCGCCGT GCGCGGCATT GCCGATGTGG CCCGCATGGC AGGTTATACT
GTCATCCTCA CCAATTCCGG CGAAGACGTT GCGGCGGAAA AGGCTGCTGT CAGGGCTTTG
CTGGCAAAGC GGGTCGATGG TTTGATTATC TCGGCTGCAA GCACGCTGGA TTTCGAACAC
CTGCAAGAAA TCCGGCAATC GGGTTGTCCG CTGGTGCTGC TTGACCGCGC CCTTCCTGTC
CTGGATGTCG ACACGGTGAC AACGGATGAC CGTGAGGCGG CCCAACAGGC AACGGAAATC
CTCATTCGCA ATGGCCATCG TGATATCGCC TATATCACCG CCTGCGATAC ACCGGACCAT
CGGATGAAAA GTCTCGACGA TCTTCATACG GCATCGGTCC GGCATCGTGT TGAAGGTTTT
ATTGCTGTTT GCACTGCCGC AGGACTGCCT GCGCCCCTGC AGGCCGTGCG TCTCGGGGCG
AATGGCCGGG AAAAATGTGA GGCGCTGGCG CTTGATCTGC TGCAATCGGC GCACCGGCCA
AGTGCCATCA TCGCCTCGGA TAGTCTTATT GCTCTGGAGG TCTTCAAGGT CGCCCGGCAT
CTCGGCCTGT CGATCCCGCA GGATCTTTCG CTGATCGCTT TTCACGATGC GGATTGGACT
GCTGTGACCT CTCCGCCGAT CACCGTTATC CGCCAGCCGG TCTATCATAT GGGAAAAACC
GTAGCAGCAC ATTTGATGGA AAGAATAAAA GGCGCAAACC ACCCAGCTCG GCATGTCATT
CTGACGACCG AGCTTATCGA GCGCAGCTCC ATTGCATCAA GGCTGCCTTG A
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| Protein sequence | MEQPPIRKSS VTVADVARAA GVSKATAARV LGGYGTVSDK VRTLVLEAAA TLDYRPNELA
RSMTTGRSGT IGVVVGDIEN PFFSSAVRGI ADVARMAGYT VILTNSGEDV AAEKAAVRAL
LAKRVDGLII SAASTLDFEH LQEIRQSGCP LVLLDRALPV LDVDTVTTDD REAAQQATEI
LIRNGHRDIA YITACDTPDH RMKSLDDLHT ASVRHRVEGF IAVCTAAGLP APLQAVRLGA
NGREKCEALA LDLLQSAHRP SAIIASDSLI ALEVFKVARH LGLSIPQDLS LIAFHDADWT
AVTSPPITVI RQPVYHMGKT VAAHLMERIK GANHPARHVI LTTELIERSS IASRLP
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