| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5545 |
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| Symbol | cvgS |
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| ID | 7381455 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 541988 |
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| End bp | 545098 |
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| Gene Length | 3111 bp |
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| Protein Length | 1036 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649127 |
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| Product | two component sensor kinase/response regulator hybrid |
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| Protein accession | YP_002547364 |
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| Protein GI | 222106573 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCACGAA ATCCTATGAT CAGTCGCCCC CTGCGTAACG TTTCGCTCAC CCCCGAACTC
GAGGGTTTCA TTCATGCCAG CCTTGCGTGC GGCGACTATG CCAACGCAAA CGACATGGTG
TGCGCAGCCC TTAACGGGCT GCGCAACGCG GGCTTGCCCA CCGGCAGGCA AGATCTCGGC
ATGCAAGACG TGGAATGGCC AAAAGGTGGC GGCAATTGCG GCGATCTGAT CCGGGGGCGG
GATTGGCGCA ATTCCAGCCT CGGGGCGGTT TGTCAATGGT CGGGAGAATT GCGGGGGACG
GTCGCCAATG TGGTCAATTC ACCGGTTGCG ACTGTATTGA TGTGGGGAAA AGACCACATC
ATGATTTATA ACGATGCCTA TAGTGTCATT GCTGCGGATC GCCACCCGAT AGCGCTCGGC
ATGCCTGTTG CCACCGCCTT CCCGGAAGTC TGGGATTGGA ACCGTGGTAT TCTGGAAGCC
GGTTTCAGGG GCGAAACGGT GGTGTATCGG GATCAGCCGA TTGTGCTGAA TCGCCGGTCG
GGACCGGAAA GACTGTTTCT CGATCTTTTC TATACTCCGG TGTACGATGC CGACGCCAAG
GTCGGTGGCG TGATGTGTAC GATTGTCGAT AACAGCGCGC GTCTGTCGGT AGAGAGGCGG
CTGGCTGAGC GCGAGGCGGA GTTGAGGCGG GTTACGGATG CCGTGCCCAT GTTGATTTCC
TATGTCGACC GGGATCACAT CTATCGTTTC GTCAATGCCA CCTATCAAGA CTGGTTCGGT
ATTGCGCCTG AACGGGTGGT TGGGCGTCAT GTGCGCGAAC TGCTTGGCGA TTTGTCCTAT
ACCAACCGCC GCTCCTCTAT TGAACGTGGC CTTGCGGGTG AAAGCTTCAC CTCGGAAGCG
ACAATTATTC GCAACGGCGC GGAGCATCGG CTGGAAATCC GCTATATCCC GCATGTCGAG
GCGGATGGTT CGATCCCGGG GGTTCATATC CTGTGCATCG ATATGCAGGA GCATGCGAGA
CGCGAAGCGG CCCTGATTAT CAGCAATCGC CGGTTTCGCA CCGCCATGGA CGCTGTCCAT
GGGGTATTGT GGACCAATGG CCGTGACGGT CGAATGGAGG GAGAACAGGC CGGCTGGTCG
GCGCTGACCG GCCAGACCAT GGCCGAATAC CAGGGCTATG GCTGGTCCGA TGCCGTCCAT
CCGGACGATG TTACCGCCAC CATTGGCGCC TGGCGGGCGG CGGTCGACAG TAAAACCATG
TTTATCCATG AGCACCGTGT CCGACGGGCC GATGGCGTCT GGCGCCAGTT TGCCATCCGG
GCGCTGCCGC TTCTGGACAA TGCGGGTGAA ATCATCGAAT GGGTCGGCGT TCACACCGAT
ATTACCCACC AGCGGGCCGC TGAAGCGACC TTGCGTCAGC AGGCCGAGAC CCTGGCGCGG
CAGGTGCGCT ACCGCGAACT GGCGGAAGAG CAGTTGCGCC ATCTGAATGA GACGCTGGAA
GCCCGCGTCG TCGCGGAAAT TGGCGAACGG CGCCAGGCCG AAGCCAAGCT GGCGCAGGCG
CAGAAAATGG AAACGGTCGG CAAGCTGACC GGCGGTGTCG CCCATGATTT CAACAACCTG
TTGCAGGTGA TTTCCGGCAA TCTTCAATTG TTGTCGAAAG ATGTGGCGGG CAATGAACGC
GCCGAAACCC GAGTTTCCAA TGCCATGGCC GGTGTGTCGC GCGGCTCAAA GCTTGCCAGC
CAATTGCTGG CCTTTGGCCG GCGCCAGGCG CTGGAACCGA AGGTCGTCAA TATCAGCCGC
TTCATCCAGG CGATGGATGA CATGCTGCGG CGCGCCGTTG GTGAGGCCAT CAAGCTGGAA
ACGGTGTTTC CAGGGGAGTT GTGGAATACC TTCATCGATC CGGCACAGAT CGAAAATGCC
CTTCTCAATC TGGCCATCAA TGCCCGCGAT GCCATGGATG GGGTCGGAAT GCTGACCATC
GAGCTTGCCA ATGTGCATCT GGATGACGCT TACGCCATGA CCCATGACGA GGTCTCTGCC
GGTCAATATG TCATGCTGGC CGTCAGCGAT ACCGGGTCAG GGATCGCGCC TGAGATCATC
GACAAGGTGT TCGAACCGTT TTTCTCCACC AAGGCGGAAG GCAAGGGCTC CGGCCTTGGC
CTGTCTATGG TCTATGGCTT TGTCAAACAG TCCGGCGGCC ATGTGAAAAT CTATTCGGAA
ATTGGCCAGG GAACAACGAT CCGGCTCTAT CTGCCGCGCG CCATGCAGGC CGAGGACGTG
GAAATTGCCG TGGATACCGG GCCGATCACC GGCGGCAGCG AGACTGTGCT GGTGGTGGAG
GACGACGAGG CTGTTCGAGA AACGGTCGTG GCGCTCTTGG CCGATCTCGG CTACCGGGTG
TTGAAGGCAG TGGATGCCAG CAGTGCGCTA AGCGTGATCG AAAGCGGTAT CCCCATCGAC
ATCCTGTTTA CCGATGTCAT CATGCCGGGT ACCCTAAAAA GCCCGGAACT GGCCCGCAAG
GCCCGCGAGC GCCTGCCCAA TATCGCCGTG CTGTTCACGT CAGGCTATAC CGAAAATTCC
ATTGTGCATG GCGGCAAGCT GGATGCAGGC GTCGAACTTT TGTCCAAGCC CTATACGAAA
GAGGCGCTGG CACGGAAATT CCGGCATGTT CTGGCCAATC AGCGTCAGCG CTTAACAGGC
AGGATCGCCG ATCCGAAACC GGCTGTGGCT GCACCTGATA TAACGTCGCC ACTGACCGTT
CTTCTGGTTG AAGATGACGC GCTGATCCGG ATGGATACCG CGGAAATTCT TCAGGATGCC
GGTTTTGTGG TGATCGATGT CGGTAGCGCA GAACAGGCGA TGGCCGCGCT TGAAACCCTG
GCCATCGATG TGCTGGTGAC GGATGTCAAC CTTCCGGGCA TGTCGGGGCG GGATCTTGCA
GCAAGAACAA GGCAGATCCG GCCAGCGGCG GGCATTGTCT TTGCCACGGG TGATGCGTCT
TGCGTGCGCG ATGAAGCGGA TGCTCGCGTG CTCACCAAGC CCTATGGGGC CGACCAACTG
GTCTCCACGG TTCGTCTGGC CTGCATTGCC GCACCGGCGA CGAGCGCATA A
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| Protein sequence | MSRNPMISRP LRNVSLTPEL EGFIHASLAC GDYANANDMV CAALNGLRNA GLPTGRQDLG
MQDVEWPKGG GNCGDLIRGR DWRNSSLGAV CQWSGELRGT VANVVNSPVA TVLMWGKDHI
MIYNDAYSVI AADRHPIALG MPVATAFPEV WDWNRGILEA GFRGETVVYR DQPIVLNRRS
GPERLFLDLF YTPVYDADAK VGGVMCTIVD NSARLSVERR LAEREAELRR VTDAVPMLIS
YVDRDHIYRF VNATYQDWFG IAPERVVGRH VRELLGDLSY TNRRSSIERG LAGESFTSEA
TIIRNGAEHR LEIRYIPHVE ADGSIPGVHI LCIDMQEHAR REAALIISNR RFRTAMDAVH
GVLWTNGRDG RMEGEQAGWS ALTGQTMAEY QGYGWSDAVH PDDVTATIGA WRAAVDSKTM
FIHEHRVRRA DGVWRQFAIR ALPLLDNAGE IIEWVGVHTD ITHQRAAEAT LRQQAETLAR
QVRYRELAEE QLRHLNETLE ARVVAEIGER RQAEAKLAQA QKMETVGKLT GGVAHDFNNL
LQVISGNLQL LSKDVAGNER AETRVSNAMA GVSRGSKLAS QLLAFGRRQA LEPKVVNISR
FIQAMDDMLR RAVGEAIKLE TVFPGELWNT FIDPAQIENA LLNLAINARD AMDGVGMLTI
ELANVHLDDA YAMTHDEVSA GQYVMLAVSD TGSGIAPEII DKVFEPFFST KAEGKGSGLG
LSMVYGFVKQ SGGHVKIYSE IGQGTTIRLY LPRAMQAEDV EIAVDTGPIT GGSETVLVVE
DDEAVRETVV ALLADLGYRV LKAVDASSAL SVIESGIPID ILFTDVIMPG TLKSPELARK
ARERLPNIAV LFTSGYTENS IVHGGKLDAG VELLSKPYTK EALARKFRHV LANQRQRLTG
RIADPKPAVA APDITSPLTV LLVEDDALIR MDTAEILQDA GFVVIDVGSA EQAMAALETL
AIDVLVTDVN LPGMSGRDLA ARTRQIRPAA GIVFATGDAS CVRDEADARV LTKPYGADQL
VSTVRLACIA APATSA
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