Gene Avi_5521 details

Gene Information

• Locus tag: Avi_5521
• Symbol: phoP
• ID: 7381436
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 517991
• End bp: 518647
• Gene Length: 657 bp
• Protein Length: 218 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 643649108
• Product: two component response regulator
• Protein accession: YP_002547345
• Protein GI: 222106554
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.424584
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGCGGATTC TGGTGGTCGA AGACGACGTC ATTCTGGGCT CTTCCCTGAA GAAGGCCTTT 
GAGAAACACG CCTATGGCGT GGACCTGATG CGGGATGGCG AATCCGGGCT GCTGGCCATT 
CAGGATAATG ACTATGCCGT TGTCATTCTG GATGTGAACC TGCCGAAGGC CAGTGGTTTC 
GAGGTGGTTC GAACCTTGCG CGCCAGCGGT AACAAGGTTC CGGTCCTGCT GCTGACGGCG 
CTTGACAGTA TCCGCTCACG GGTCGAGGGA CTGGATGAAG GGGCCGACGA TTATCTTGTG 
AAGCCTTTCG ATCTGGACGA GCTTCTGGCC CGTGTTCGAG CGCTCGCCCG CCGGTATGAA 
GGGCGCACCG AGACATTGAT CCGTTGCGGC AATGTCGAGC TTGACCCTTC CGCGATGATC 
GCTCGCCAGA ACGGCACGCC CCTGCATGTG GCTGGCAAGG AATTCCATCT GCTCAAGCTG 
CTGATGGAGC GTGCTGGGCG CTACGTCACC AAAAGCGATA TCGAATACGC TCTTTACGAT 
ATTTCGGCGA TGGTGGAGAG CAATACGATA GAAGTGACGA TCTACAGTCT GCGCAAAAAA 
TTGGGCGCTG ATTTCATCAA ATCCATCAGA GGCGTCGGCT ATATGGTCGA GCGGTGA 

 

Protein sequence

MRILVVEDDV ILGSSLKKAF EKHAYGVDLM RDGESGLLAI QDNDYAVVIL DVNLPKASGF 
EVVRTLRASG NKVPVLLLTA LDSIRSRVEG LDEGADDYLV KPFDLDELLA RVRALARRYE 
GRTETLIRCG NVELDPSAMI ARQNGTPLHV AGKEFHLLKL LMERAGRYVT KSDIEYALYD 
ISAMVESNTI EVTIYSLRKK LGADFIKSIR GVGYMVER