| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5512 |
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| Symbol | |
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| ID | 7381428 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 506945 |
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| End bp | 508126 |
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| Gene Length | 1182 bp |
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| Protein Length | 393 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643649100 |
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| Product | ABC transporter, periplasmic substrate-binding protein |
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| Protein accession | YP_002547337 |
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| Protein GI | 222106546 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4134] ABC-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.142427 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGGTGA CGATCAATAG AAGAACATTC ATGGGCACGG CCGCTGGTGT GGCCGGGCTC
GGCCTGTTGC CGCGTCTAGG CATGGCAGCC CCCAAACAAC CGGCAAGTCC TGTCACTGTT
ACCGTCGCTG ATGTGGCGGG CAACTTGGCG TTGACCCAGG GCATGTTCGA GAAATATGCT
GCGGCAAAGC CGCAATGGGT GTCGCGTTTT GCCTTCACAA AGGCCCCTGC CCCGGAACTG
CCATCAAAGC TTAAAGCGCA ACAGGCAGCC GGAAAAGTCG ATATCGACCT GGTGCTGACC
GGTACGGATG CGCTGGCCGC TGGCCTTTCG CAAGGGCTTT GGGTCGATTT GTCCGCCCAT
AAGGCAGACC TGCCGGATCT GGAGAAAATC CTGCTGCCGC AGGCTTTCAA GATGCAGGCG
CTGGCCCAGA ACCAGGGCGT CGTCGTCACC TATTATCCGT CTGGGCCGTT GATCGAATAT
ATGCCTGACA GGGTCAAGCA GGTGCCGGGC ACCGCCGAGG AATTGCTGGC CTGGACCAAG
GCCAATCCCA AGCGCTTCAT GTATGCCCGC CCTGCCAATT CCGGGCCAGG TCGGACATTC
CTGATGGGTC TTCCTTACCT GCTGGGTGAT AAAGACCCGA AAGATCCGGT CAATGGCTGG
GCCAAGACCT GGGATTACCT GAAGGCAATC GGCGAAAACG TCGAATATTA CGGCACCGGC
ACCACGCAGG TGATGAAGGA GCTTGGCGAA GGCACCCGCG ATATTGTCGT CACCACCACT
GGCTGGGACA TCAACCCGCG CGTGCTCGGC ATCGTGCCGG AAGAGGCCAA GGTGGCAACC
CTCAAGGGCT TCCATTGGGT CACTGACGCC CATTACGCCG TCATTCCGAA GGGAGTTTCG
GAAGAAAAGC TCGCGGTTCT GCTGGATGTA ATCAATTTCA TTCTTCAGCC GCAGCAACAG
GCGATTGCCT TTGACGATGG CTATTTCTAT CCCGGCCCGG CGGTCAAGGA TGTGACGATT
TCCATGGCGC CTCAAAAGAG CCAGGACGCC ATCGCCGAAT TTGGCCGCAA GGAATATGAC
GGCTGGATCG CCAATAACCC GCTGGAAGTG CCGCTCGATC CATCGAAAAT CGTCGATGCC
TTCCGCATCT GGGACGAAAA GATCGGCGCA GCCAAGGGCT GA
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| Protein sequence | MLVTINRRTF MGTAAGVAGL GLLPRLGMAA PKQPASPVTV TVADVAGNLA LTQGMFEKYA
AAKPQWVSRF AFTKAPAPEL PSKLKAQQAA GKVDIDLVLT GTDALAAGLS QGLWVDLSAH
KADLPDLEKI LLPQAFKMQA LAQNQGVVVT YYPSGPLIEY MPDRVKQVPG TAEELLAWTK
ANPKRFMYAR PANSGPGRTF LMGLPYLLGD KDPKDPVNGW AKTWDYLKAI GENVEYYGTG
TTQVMKELGE GTRDIVVTTT GWDINPRVLG IVPEEAKVAT LKGFHWVTDA HYAVIPKGVS
EEKLAVLLDV INFILQPQQQ AIAFDDGYFY PGPAVKDVTI SMAPQKSQDA IAEFGRKEYD
GWIANNPLEV PLDPSKIVDA FRIWDEKIGA AKG
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