| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5503 |
|---|
| Symbol | |
|---|
| ID | 7381420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 498509 |
|---|
| End bp | 499414 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643649092 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002547329 |
|---|
| Protein GI | 222106538 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACA CCATTTCCGC CATCGGCTTT TGCAATCGCA CCGGCAAGGG CGACCTGACG
ACACTGGACG CTTCGCTGCG TGAAATCGCC GATTCCGGTG CGACGGCCTG CGAAATCGGC
ATTTATGGCG AAGAAATCAT CTCCGGTGGC CGTATTATCG AAGATCGCAC CCAGCGCGTC
GCTGACATTG TCAGCCAATA CAGCTTCAAG AAATTATCCT TGCACGGCCA GGTCAGCTCC
AATTTCATGG ACCGCGAGCA TCTGCATCTG CAAAAGAACG TGGTTCGCGC CATGCTGGAA
CTATGCGACC GCCTCGGCGC CGGCATTCTC GTCCATCATT CGGGTGCCGC CCAGCCGGTA
GAAGGTGTTG ACGGCGCGGA TCTCGACAAG ATGGAGCGCG AAGCGCTGCT GGAAATGGCA
GATATCGCCA AGGGTTATGG CGTGCGCATC GCGCTTGAAA ACATCTTCAC CACCGAGACC
GGCCAGTACC GCCAGACGCC AAGCCAAGTG GCCGAAACGG TCAAGGCCAT CAGCCATGAC
CATGTCGTCG CCCTGATCGA TTTCTCCCAT GCCTATATCG AATCCACCTT CAAGGGACTG
GATTTCCGCG AGCAGCTGCG CGCCATGGCA CCAGTGACCG GCCATCTCCA CGTCCATGAC
AGCTTTGGCC TGCCCTATAC GATGAAGGAA TTCTTCCATA ACGCGGAAGC AACTGCGCTC
GGCATCGGCG ACCTGCATCT GCCGCTCGGC TGGGGCGATA TTGCCTGGGA CGAGATCTTC
GCCGAACTCA CTTTCCTGCC CGACACCATG CTGATCATGG AAATCGGCGC CGAACGCTTC
CTCGACCAAC AGCCCCGCTG CCTGGACCGC GCCCGCGAAC TGGCGAAGCT GGTGAACCTG
CGCTGA
|
|---|
| Protein sequence | MTDTISAIGF CNRTGKGDLT TLDASLREIA DSGATACEIG IYGEEIISGG RIIEDRTQRV
ADIVSQYSFK KLSLHGQVSS NFMDREHLHL QKNVVRAMLE LCDRLGAGIL VHHSGAAQPV
EGVDGADLDK MEREALLEMA DIAKGYGVRI ALENIFTTET GQYRQTPSQV AETVKAISHD
HVVALIDFSH AYIESTFKGL DFREQLRAMA PVTGHLHVHD SFGLPYTMKE FFHNAEATAL
GIGDLHLPLG WGDIAWDEIF AELTFLPDTM LIMEIGAERF LDQQPRCLDR ARELAKLVNL
R
|
|---|
| |