| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5427 |
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| Symbol | |
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| ID | 7381525 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 427873 |
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| End bp | 428481 |
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| Gene Length | 609 bp |
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| Protein Length | 202 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643649033 |
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| Product | thiamine pyrophosphate-requiring enzyme |
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| Protein accession | YP_002547270 |
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| Protein GI | 222106479 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.21864 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCGCT ATGATTGCAT GAAGCTGCTG GCCGCACGGC TGGAAAACGA GCTTGTCATC
CTGTCGCTCG GGGCCTCCGT TGATGAATGG TATAACGCCG CCCCGCATAT GCGCCAAGCC
AGCCTGTTCC AGCAGCAGCT TGGCTGCGTC ACGCCGCAGG CCTTCGGGTT GGCGGCAGGG
CTTCCGCATC GCCGCATCAT CTCGCTCGAT ACCGATGGCG GCATGATGTT CAACCTTGGC
ATTCTCGCCA CCCTTGGCAA CGAACAACCG AAAAACCTGT TCATCGTCGT CTGGGACAAT
GAGTGCTACC AGTCGATTGG CGGGCCGCCG ACCCACACGG CTTTCGGCCG GGTGGATATT
GCCGCCATTG CTCGCGGCGC CGGGATAGAC AATGCCTTGA CCGCCCGCAC GCTGGAAGAG
TTCGATTCCC ATTGCGAGGC AGGTCTTAAA GCGGATGTTC CCTATGTGGT GGTTGCCAAG
GTGGCAGGCA CCGTGCAACC GGACATCAAG CGCAAGCATT CGGATGGGCG CGAGGACAAA
TATATCTTCG TACGCCATGT CGAAGCCAGC GAGGGCATCG TCATCATGGG GCCGAGCGAG
CACAATTGA
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| Protein sequence | MKRYDCMKLL AARLENELVI LSLGASVDEW YNAAPHMRQA SLFQQQLGCV TPQAFGLAAG
LPHRRIISLD TDGGMMFNLG ILATLGNEQP KNLFIVVWDN ECYQSIGGPP THTAFGRVDI
AAIARGAGID NALTARTLEE FDSHCEAGLK ADVPYVVVAK VAGTVQPDIK RKHSDGREDK
YIFVRHVEAS EGIVIMGPSE HN
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