| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5358 |
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| Symbol | dppB |
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| ID | 7380713 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 357611 |
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| End bp | 358558 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643648974 |
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| Product | ABC transporter membrane spanning protein (dipeptide) |
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| Protein accession | YP_002547211 |
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| Protein GI | 222106420 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCCACTT TCCTTGCCCG GCGCCTGTTG CTGGCCATAC CGACGCTGCT GATCATTTCT
GTCTTCGTTT TTTCGCTGCA AAAGCTTCTG CCGGGAGATC CGGTGCTGAT CATGGCGGGA
GAAGACCGCG ATCCCGCGGT GATGGAAAGC CTGCGCGAGA AATACCACCT GAATGATCCG
ATGCCCGTTC AATATGTAAT GTGGCTTGGC GCCGCGCTGA AGGGTGATCT CGGCATGTCG
TTGCGAACCA ACCAGCCCGT GCTGGAACTG ATCGGCGAGA AACTGCCCGT CACCTGCCAA
CTGGCCATCA TGTCGATGAT CTTTGCTCTC ACCCTCGGCA TTCCCCTCGG CATTCTGGCC
GCGGTCAAGA AGAATACGCT GATCGATTAC CTGGCTAGCG TGGTGGCGCT ATCTGGCCTG
TCGATCCCGA ATTTCTGGCT TGGTATCATG CTCATTCTTC TGGTTTCGGT CCGGCTCGGC
TGGCTGCCGG CCTCCGGTTA TCAACCATTC TTCTCCGACC CATGGATGTC GATGAAAACC
ATGCTGATGC CGTCTTTCGT GCTCGGCAAT GCCTTGGCAG CATCGATCAT GCGCCACACG
CGCTCGGCCA TGCTAGGGGT TCTCAGTTCG GATTATGTGC GCACCGCCCG CGCCAAGGGC
ATGCCCGAAC GTTCGGTCAT CTTGTCTCAC AGTTTTCGCA ATGCTGTTTT GCCCATCGTC
ACCCTGACCG CCTTGCTTTT TGGCGAATTG CTGGCCGGTG CGGTGCTGAC GGAGCAGATT
TTCACCATTC CCGGCTTTGG CAAGCTGATC GTCGATGCGG TGTTCAATCG CGACTATGCC
GTCGTCCAGG GCGTTGTGCT CTGCACCGCC ATCGGCTTCA TCCTGATGAA CCTGATGGCC
GATTGTCTCT ATCTTCTTCT CAATCCTCGG ATGAGGGCCA GCCTATGA
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| Protein sequence | MPTFLARRLL LAIPTLLIIS VFVFSLQKLL PGDPVLIMAG EDRDPAVMES LREKYHLNDP
MPVQYVMWLG AALKGDLGMS LRTNQPVLEL IGEKLPVTCQ LAIMSMIFAL TLGIPLGILA
AVKKNTLIDY LASVVALSGL SIPNFWLGIM LILLVSVRLG WLPASGYQPF FSDPWMSMKT
MLMPSFVLGN ALAASIMRHT RSAMLGVLSS DYVRTARAKG MPERSVILSH SFRNAVLPIV
TLTALLFGEL LAGAVLTEQI FTIPGFGKLI VDAVFNRDYA VVQGVVLCTA IGFILMNLMA
DCLYLLLNPR MRASL
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