| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5344 |
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| Symbol | dapE |
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| ID | 7380702 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 344389 |
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| End bp | 345795 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643648963 |
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| Product | hypothetical protein |
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| Protein accession | YP_002547200 |
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| Protein GI | 222106409 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGATC TTGAAACCGT CCTCGCCCAT GTCGATGACA ATCTGCCCTC CAGTCTGGAA
ACACTGTTCG ATCTGGTGCG TATCCCCTCG ATTTCCACCG ATCCGGCCTA CAGCCCGCAT
TGCCGCAAGG CTGCGGATTT CCTGGCGACC TATCTGAGCG GACTGGGCTT TGCCGCATCG
GTGCGCGACA CGTCAGGTCA TCCGATGGTG GTTGCGCATC ACGAGGGCCA AACCGCGGAT
TGCCCGCATG TGCTCTTTTA CGGCCATTAC GATGTTCAGC CGGTGGACCC GCTGAACTTA
TGGCAAAACG ACCCGTTCGA CCCAGCTATT CGTGACGGTT CAACCGGAGA AAAGATCATC
ACCGGACGCG GTACTTCGGA TGACAAGGGA CAGCTCCTGA CCTTCATCGA GGCTCTACGC
GCCTTCAAGG AAACCAAGGG CGGACTGCCG GTGCGTGTGA CCATTCTCTT CGAAGGCGAG
GAGGAATCGG GATCGCCGTC GCTTCAGCCT TTTCTCGAAG CCCATGCTCA GGAGTTGAAG
GCTGATTTTG CCATGGTCTG CGACACCGGC ATGTGGGACA CGCAAACACC GGCGATCTGC
GCCAGCCTGC GCGGTCTGGT TGGCGAGGAA ATCACCATCA AGGCCGCCAG CCGTGACCTC
CATTCGGGCG GATATGGTGG CGTCGCAGCC AATCCGTTGC ATGTCCTGAG CGATATCATG
GCTGGCCTGC ATGATCAAAC CGGTGCCGTG ACCCTGCCCG GCTTTTATGA TGGCGTCGAG
GAAACACCGC CCGATATCAA GGCCGTCTGG GCGGATCTGG AGAAGACCCA ACCCGCGTTC
CTGACCGATA TCGGCCTGTC CGTCCCGTCA GGCGAAAAAG GCCGTAGCGT TCTGGAATTG
CTCTGGGCGC GCCCGACCGC CGAGATCAAC GGCATGTCCG GCGGCTATAC CGGCAAGGGC
TTCAAGACCG TAATTGCCGC CGAGGCGATG GCCAAGGTAT CCTTCCGTCT GGTGGGAAAA
CAGGACCCGC AAAAAATCCG CGACAGCTTT CGCGCCTATG TAACCTCAAA ATTACCTAGT
GATTGCCGGG TTGAATTTCA GGCCGAAGGG GCCTCACCTG CCATTCAATT GCCCTATGAC
TCGCCAATCC TCGCCACGGC CAAGGCGGCT CTTTCACAGG AATGGCCAAA GCCGGCCATT
GTTGTCGGCG GCGGCGGATC AATCCCGATT GTCGGCAGCT TTCAGTCCAT GCTCGGCATG
GACTCCTTGT TAGTAGGCTT TTCGCTGGAC GATGACTGCG TTCACTCGCC CAATGAAAAA
TACAACCTCA CCTCTTTTCA CAAGGGCACC CGATCCTGGG TGCGGATCTT GCACGGCCTG
AGCGACGAGG CGATCAACAG GCTGTAA
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| Protein sequence | MTDLETVLAH VDDNLPSSLE TLFDLVRIPS ISTDPAYSPH CRKAADFLAT YLSGLGFAAS
VRDTSGHPMV VAHHEGQTAD CPHVLFYGHY DVQPVDPLNL WQNDPFDPAI RDGSTGEKII
TGRGTSDDKG QLLTFIEALR AFKETKGGLP VRVTILFEGE EESGSPSLQP FLEAHAQELK
ADFAMVCDTG MWDTQTPAIC ASLRGLVGEE ITIKAASRDL HSGGYGGVAA NPLHVLSDIM
AGLHDQTGAV TLPGFYDGVE ETPPDIKAVW ADLEKTQPAF LTDIGLSVPS GEKGRSVLEL
LWARPTAEIN GMSGGYTGKG FKTVIAAEAM AKVSFRLVGK QDPQKIRDSF RAYVTSKLPS
DCRVEFQAEG ASPAIQLPYD SPILATAKAA LSQEWPKPAI VVGGGGSIPI VGSFQSMLGM
DSLLVGFSLD DDCVHSPNEK YNLTSFHKGT RSWVRILHGL SDEAINRL
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